Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N03
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0570 - 18818175-18818609,18819681-18819689 31 0.31
01_07_0044 - 40701286-40701408,40701642-40701758,40702406-407024... 30 0.40
04_03_0984 - 21432119-21432157,21432722-21434068 29 0.93
07_03_0925 + 22635504-22635668,22635768-22635947,22636036-226361... 28 1.6
11_01_0340 + 2534998-2535660 27 3.8
08_02_1188 + 25053594-25054941,25055025-25055650 27 3.8
06_03_1051 + 27215113-27215658 27 3.8
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 27 5.0
09_04_0350 + 16899076-16900164 27 5.0
08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965 27 5.0
05_07_0302 - 29091666-29092331 27 5.0
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 26 6.6
12_02_1031 + 25537495-25537552,25538774-25538836,25538966-255392... 26 8.7
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 26 8.7
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841... 26 8.7
08_02_0680 + 20011049-20011144,20011249-20011500,20011824-20011832 26 8.7
05_04_0178 + 18775074-18775928 26 8.7
03_02_0730 + 10784784-10785341 26 8.7
01_06_0438 - 29376338-29377519 26 8.7
01_05_0734 + 24735939-24736790 26 8.7
>08_02_0570 - 18818175-18818609,18819681-18819689
Length = 147
Score = 30.7 bits (66), Expect = 0.31
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 111 EAVVSCGSGGERGAAACSARQVLGAAACGARDGG 212
EAVV C GG G+ R+ G CG R GG
Sbjct: 31 EAVVGCLPGGREGSRCRGQRE--GGGCCGGRGGG 62
>01_07_0044 -
40701286-40701408,40701642-40701758,40702406-40702498,
40702598-40702717,40702932-40703048,40703202-40703297,
40703395-40703544,40703916-40704070,40704156-40704196,
40704275-40704357,40704827-40705264
Length = 510
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 114 AVVSCGSGGERGAAACSARQVLGAAACGARDGG 212
A+ G GG RG + VLG A C R GG
Sbjct: 23 AIGGAGDGGRRGGGGAARIGVLGRARCRRRRGG 55
>04_03_0984 - 21432119-21432157,21432722-21434068
Length = 461
Score = 29.1 bits (62), Expect = 0.93
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 114 AVVSCGSGGERGAAACSARQVLGAAACGARDGGSPAR 224
+ V+ G G+ AAA + R+V A+C R GG PA+
Sbjct: 92 SAVAAGEAGDARAAAAALREVDRRASC--RGGGDPAQ 126
>07_03_0925 +
22635504-22635668,22635768-22635947,22636036-22636125,
22636271-22636366,22636485-22636592,22636635-22636744,
22637956-22638058,22638244-22638297,22638542-22638697,
22638915-22639037,22639263-22639312,22639414-22639537
Length = 452
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 126 CGSGGERGAAACSARQVLGAAACGARDGG 212
C GG RG +CS+ + +C A +GG
Sbjct: 30 CCDGGIRGRVSCSSHRRSDHPSCAAEEGG 58
>11_01_0340 + 2534998-2535660
Length = 220
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 123 SCGSGGERGAAACSARQVLGAAACGARDGGSPARVD 230
S +G AAAC ++ A+ + GG P R D
Sbjct: 66 SSSTGSASRAAACERKEPGSPASSSSSSGGKPGRAD 101
>08_02_1188 + 25053594-25054941,25055025-25055650
Length = 657
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 132 SGGERGAAACSARQVLGAAACGARDGG 212
+GG AAA +++ LG AAC R GG
Sbjct: 516 AGGAHKAAAAQSKK-LGGAACALRGGG 541
>06_03_1051 + 27215113-27215658
Length = 181
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 155 CVLCATSTWRCCVWCSRRRLAGSSGW 232
C L S +C V C+RR +A GW
Sbjct: 52 CALGLNSMLQCVVRCTRRAVADPVGW 77
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +3
Query: 111 EAVVSCGSGGERGAAACSARQVLGAAACGARDGGSPAR 224
E +S G GGER C A QV+GA G DG + AR
Sbjct: 2 EVPISGGGGGER---FCHAAQVVGAD--GEMDGEAMAR 34
>09_04_0350 + 16899076-16900164
Length = 362
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 129 GSGGERGAAACSARQVLGAAACGARDGGSP 218
GSGG GA R A GA DGG P
Sbjct: 320 GSGGRLGARGAGGRVGGRLGARGAADGGRP 349
>08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965
Length = 357
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 114 AVVSCGSGGERGAAACSARQVL-GAAACGARD 206
A +CG GG AA +A Q++ GA G D
Sbjct: 150 AATACGGGGGGDTAAAAAAQIMQGAGGGGGAD 181
>05_07_0302 - 29091666-29092331
Length = 221
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 114 AVVSCGSGGERGAAACSARQVLGAAACGARDGGS 215
A+V+ G GG+ + +G AA G GGS
Sbjct: 8 AIVTSGGGGDVACLGGGGAEAIGGAAGGEGGGGS 41
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 120 VSCGSGGERGAAACSARQVLGAAACGARDGG 212
VSCG GGER S + G R GG
Sbjct: 82 VSCGGGGERTLVFASGGVCVPPEIFGVRGGG 112
>12_02_1031 +
25537495-25537552,25538774-25538836,25538966-25539279,
25539361-25539612,25539698-25540411
Length = 466
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 120 VSCGSGGERGAAACSARQVLGAAACGAR 203
V G GG A C R GAAA A+
Sbjct: 245 VDNGGGGGGAARGCGRRSTCGAAAAAAK 272
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 129 GSGGERGAAACSARQVLGAAACGAR 203
G GGE AA +A V GAAA R
Sbjct: 11 GDGGESSPAAAAAAAVAGAAALHIR 35
>09_04_0600 +
18883094-18883393,18883606-18883755,18883851-18884142,
18884697-18884858,18884958-18885021,18887573-18888080
Length = 491
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 126 CGSGGERGAAACSA-RQVLGAAACGARDGGSPAR 224
C + G GAAA +A R AAA R GG R
Sbjct: 330 CAADGGAGAAAGAAGRDAAVAAAASGRSGGGGGR 363
>08_02_0680 + 20011049-20011144,20011249-20011500,20011824-20011832
Length = 118
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 129 GSGGERGAAACSARQVLGAAACGARDGGSPARV 227
G GG GA A +R+ A G +DGG RV
Sbjct: 37 GGGGGGGAKAHLSRRDSSGGARGRQDGGFVGRV 69
>05_04_0178 + 18775074-18775928
Length = 284
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 120 VSCGSGGERGAAACSARQVLGAAACGA 200
+ C +GG GAAA +A V+ AAA A
Sbjct: 67 LGCETGGVDGAAATAADAVVVAAAAAA 93
>03_02_0730 + 10784784-10785341
Length = 185
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 129 GSGGERGAAACSARQVLGAAACGAR 203
G+ G A+ AR+ LGAAA GAR
Sbjct: 97 GARRRLGVASTGARRRLGAAATGAR 121
>01_06_0438 - 29376338-29377519
Length = 393
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +3
Query: 114 AVVSCGSGGERG-----AAACSARQVLGAAACGARDGGS 215
A V+ G+GG AA +R LG AAC DGG+
Sbjct: 84 ASVAEGAGGAHDDGLLDAALAFSRNQLGGAACDGSDGGA 122
>01_05_0734 + 24735939-24736790
Length = 283
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 138 GERGAAAC-SARQVLGAAACGARDGGSPAR 224
GE+GAAA AR++ AAA R G P+R
Sbjct: 218 GEKGAAARRKARELREAAAKATRAPGGPSR 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,354,618
Number of Sequences: 37544
Number of extensions: 61585
Number of successful extensions: 565
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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