Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N02
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   4.3  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   4.3  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    24   10.0 

>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 308 RQQYAAMCARAQATGQPLPAHVFTHVNGKP 397
           +Q     C RA A  + L  H+ +H N KP
Sbjct: 68  KQYVCETCTRAFARLEHLKRHIRSHTNEKP 97


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 178 SLKRRAYDDINGLDRAGSGCSREC 249
           SL+ R YD I+G++ AG+G  ++C
Sbjct: 251 SLRGRTYD-IDGIEFAGTGDLKQC 273


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 68  PSGAFGGLGKATWSGAGSRSPR 3
           P G FGG G     G G R  R
Sbjct: 122 PHGGFGGRGGGRMGGRGGRGRR 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 886,852
Number of Sequences: 5004
Number of extensions: 8398
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)