Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N02
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504...    29   1.0  
07_03_0949 - 22826372-22826542,22827067-22827239,22828179-22828455     28   2.4  
01_06_1124 - 34679205-34680926,34681438-34682811                       28   2.4  
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    27   4.1  
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945...    26   9.5  
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    26   9.5  

>04_04_1592 -
           34649484-34649547,34650118-34650186,34650325-34650444,
           34650630-34650742,34650824-34650898,34651224-34651346,
           34651427-34651446,34652354-34652410,34652922-34653860,
           34653961-34654189,34654296-34654439,34654527-34654601,
           34655363-34655433,34656103-34656205,34656407-34656633,
           34656791-34656908,34657239-34657369,34657709-34657802
          Length = 923

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 9   GPATGAGPRRLPQAAESTRRQFDVRARIVPRGDSR 113
           GP      RR+  A +S +   DV A +VPR +SR
Sbjct: 477 GPVLSKSGRRIEIANDSRKESSDVAAAVVPRTNSR 511


>07_03_0949 - 22826372-22826542,22827067-22827239,22828179-22828455
          Length = 206

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 6   RGPATGAGPRRLPQAAESTRRQFDVRARIVPRGDSRE 116
           +GP  G+G  R P+A E+ RR  ++ +++    + RE
Sbjct: 47  KGPGPGSGEEREPRAEEALRRLAELDSQLEGLSEPRE 83


>01_06_1124 - 34679205-34680926,34681438-34682811
          Length = 1031

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 378 VKTCAGSGWPVACARAH 328
           +K CAG GWP  C + H
Sbjct: 96  LKACAGLGWPRCCMQLH 112


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 114 RGYLRAGQYALVHQTAVWCFRRLGEGDVVRRR*PVPSC 1
           +G L AG+  L+      CFR  G  D  RRR  V  C
Sbjct: 65  QGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGC 102


>04_04_0217 -
           23693124-23693535,23693965-23694052,23694428-23694503,
           23694729-23694787,23694853-23694934,23695533-23696577,
           23696700-23696998
          Length = 686

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 95  DNTRSYIKLPSGAFGGLGKATWSGAGS 15
           D  R   KL +   GG G A W G GS
Sbjct: 159 DEDRGTTKLSAAVRGGDGGAAWRGGGS 185


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 114 RGYLRAGQYALVHQTAVWCFRRLGEGDVVRRR*PVPSC 1
           +G L +G+  L+      CFR  G  D  RRR  V  C
Sbjct: 65  QGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGC 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,379,226
Number of Sequences: 37544
Number of extensions: 93590
Number of successful extensions: 492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)