Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M24
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 43 2e-05
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 38 3e-04
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 26 1.8
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 1.8
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 26 1.8
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 25 2.4
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 24 5.6
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 24 5.6
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 24 5.6
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 24 7.5
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 23 9.8
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 42.7 bits (96), Expect = 2e-05
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 201 ETLASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLY 338
E ++ LP V++RI LR LQK++ D+E++F E+ LE Y K Y
Sbjct: 66 EGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKY 111
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 38.3 bits (85), Expect = 3e-04
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +3
Query: 147 SGITRNE--MLAAITSRIQVET------LASLPPNVRKRIRALRTLQKQFVDIEAKFYSE 302
SG+ RN ML+ I R+ + SL P V+ RI AL+ LQK I+ +F +
Sbjct: 56 SGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEFRQK 115
Query: 303 VHALECKYEKLYK 341
+ LE KYEK Y+
Sbjct: 116 MLDLETKYEKKYQ 128
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 1.8
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -2
Query: 276 PRTVFVMFAERVYVYAHWVVET-PAFQLGCGWL 181
P +F + Y Y HW+V T GCG L
Sbjct: 457 PAGIFWLSWSGYYSYVHWIVPTLSGLATGCGIL 489
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 1.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 238 VYALCEHYKNSSWTLRLNSTVKF 306
+ ALCE K SWT+ + + F
Sbjct: 48 IQALCERLKEQSWTIVFKTLIVF 70
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 200 NLDAAGYSG*HFISGDTAFHEMFS*FTAGNNFFFLSRLDIGCVI 69
NLD Y G + GD FHE+ + +++ +L + C+I
Sbjct: 157 NLDVGSYDGILSVGGDGLFHEVINGLGERDDYLEAFKLPV-CMI 199
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 292 NLASMSTNCFCNVRRARIRLRTLGGRDASVSTW 194
++ + ++NCFC R +GG DA S W
Sbjct: 189 DIKAHNSNCFCIEFSPDNRHLAIGGADAITSLW 221
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 24.2 bits (50), Expect = 5.6
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 196 KLKRWRLYHPMCVNVYALCEHYK--NSSWTLRLNSTVKFTLWNA 321
K KR L+ +C+ +Y+L H + WT +NS + F+ ++A
Sbjct: 227 KPKRSGLFSSLCLPIYSLLHHKQIFGPFWTSFVNSCL-FSAFDA 269
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 5.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +1
Query: 214 LYHPMCVNVYALCEHYKNSSWTL 282
++HP +Y LC K W L
Sbjct: 224 VFHPDAARLYRLCSSLKRICWEL 246
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 24.2 bits (50), Expect = 5.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 183 TSRIQVETLASLPPNVRKRIRALRTLQKQFV 275
+S+I LA LPP+++ I+ LQK+ +
Sbjct: 693 SSQISSSALAQLPPSMQSDIQQQLRLQKRSI 723
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 23.8 bits (49), Expect = 7.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 162 NEMLAAITSRIQVETLASLPPNVRKRIRALRTLQKQFVDIEAKFYSEV 305
NE+ T++ +ET+ PN++ L+K F D +FYSEV
Sbjct: 333 NEVEKGSTNKEILETILR-KPNLQTYF--FEFLKKNFCDENQRFYSEV 377
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -2
Query: 276 PRTVFVMFAERVYVYAHWVVET 211
P +F + Y Y HW+V T
Sbjct: 461 PAGIFWLAWSGYYTYVHWIVPT 482
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,715
Number of Sequences: 5004
Number of extensions: 20881
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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