Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M24
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 56 6e-09
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 54 3e-08
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 53 5e-08
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 49 1e-06
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 32 0.14
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 32 0.14
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 32 0.14
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 30 0.41
11_08_0020 - 27711598-27711669,27711854-27711970,27712088-277122... 26 6.7
05_03_0238 - 10783451-10783735,10784686-10785762 26 6.7
04_04_1128 + 31103582-31103709,31105231-31105344,31105906-311064... 26 6.7
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 26 8.9
09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804 26 8.9
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800... 26 8.9
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 56.4 bits (130), Expect = 6e-09
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3
Query: 201 ETLASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYK 341
+ L SL P VRKR+ LR +Q Q D+EAKF+ E ALE KY+K+Y+
Sbjct: 48 DVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYE 94
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 54.0 bits (124), Expect = 3e-08
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3
Query: 201 ETLASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYK 341
+ L +L PNVRKR+ LR +Q Q +IE KF+ E ALE KY+KLY+
Sbjct: 49 DVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYE 95
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 53.2 bits (122), Expect = 5e-08
Identities = 27/61 (44%), Positives = 37/61 (60%)
Frame = +3
Query: 156 TRNEMLAAITSRIQVETLASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKL 335
T L A+ + V+ L SL P+VRKR+ L +Q Q ++E KF+ E ALE KY+KL
Sbjct: 141 TLKNKLQALAEQ-HVDVLESLAPSVRKRVDVLMEIQSQHDELEVKFFEEKAALEAKYQKL 199
Query: 336 Y 338
Y
Sbjct: 200 Y 200
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 48.8 bits (111), Expect = 1e-06
Identities = 27/61 (44%), Positives = 35/61 (57%)
Frame = +3
Query: 156 TRNEMLAAITSRIQVETLASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKL 335
T L A+ + V+ L SL P VRKR+ L +Q Q ++EAKF E ALE Y+KL
Sbjct: 17 TLKNKLQALAEQ-HVDVLESLAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKL 75
Query: 336 Y 338
Y
Sbjct: 76 Y 76
>12_02_0035 - 12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 31.9 bits (69), Expect = 0.14
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 126 LAKHLMKSGITRNEMLAAITSRIQVETLASLPPNV-RKRIRALRTLQKQFVDIEAKFYSE 302
L K ++ + A S Q +LA L V RK +RAL T +K+ +D AK +
Sbjct: 799 LEKEFLEENDLMSSWTALDVSAAQTASLARLQRGVARKALRALCTRRKKSLDRIAKLEKD 858
Query: 303 VHALECKYEKL 335
L CK +++
Sbjct: 859 RDYLRCKLDRM 869
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 31.9 bits (69), Expect = 0.14
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 126 LAKHLMKSGITRNEMLAAITSRIQVETLASLPPNV-RKRIRALRTLQKQFVDIEAKFYSE 302
L K ++ + A S Q +LA L V RK +RAL T +K+ +D AK +
Sbjct: 622 LEKEFLEENDLMSSWTALDVSAAQTASLARLQRGVARKALRALCTQRKKSLDRIAKLEKD 681
Query: 303 VHALECKYEKL 335
L CK +++
Sbjct: 682 RDYLRCKLDRM 692
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 31.9 bits (69), Expect = 0.14
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 126 LAKHLMKSGITRNEMLAAITSRIQVETLASLPPNV-RKRIRALRTLQKQFVDIEAKFYSE 302
L K ++ + A S Q +LA L V RK +RAL T +K+ +D AK +
Sbjct: 622 LEKEFLEENDLMSSWTALDVSAAQTASLARLQRGVARKALRALCTRRKKSLDRIAKLEKD 681
Query: 303 VHALECKYEKL 335
L CK +++
Sbjct: 682 RDYLRCKLDRM 692
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 30.3 bits (65), Expect = 0.41
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 126 LAKHLMKSGITRNEMLAAITSRIQVETLASLPPNV-RKRIRALRTLQKQFVDIEAKFYSE 302
L K ++ + A S Q +LA L V RK +RAL T +K+ +D K +
Sbjct: 623 LEKEFLEENDLMSSWTALDVSAAQTASLARLQRGVARKALRALCTRRKKSLDRITKLEKD 682
Query: 303 VHALECKYEKL 335
L CK +++
Sbjct: 683 RDYLRCKLDRM 693
>11_08_0020 -
27711598-27711669,27711854-27711970,27712088-27712204,
27712482-27712572,27712770-27712851,27712926-27713039,
27713155-27713206,27713321-27713563,27713654-27713830,
27714672-27714770
Length = 387
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 186 SRIQVETLASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKL 335
S I +T A+ P+ RKR + F D+ A F + AL K KL
Sbjct: 280 SVIYADTCATADPDGRKRALLIGGGIANFTDVGATFSGIIRALREKESKL 329
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 26.2 bits (55), Expect = 6.7
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 141 MKSGITRNEMLAAITSRIQVETLASLPPNVRKRI-RALRTLQKQFVDIEAKFYSEVHALE 317
M+S +++ E T +QV+ L L + I + R + KQF D K ++ ALE
Sbjct: 150 MESRLSKVEGFKKTTKMLQVQ-LDILDKKLGNEIDKTRRDITKQFEDKGNKLEIKMKALE 208
Query: 318 CKYEKLYK 341
K +KL K
Sbjct: 209 GKTDKLDK 216
>04_04_1128 +
31103582-31103709,31105231-31105344,31105906-31106446,
31106911-31107003,31107041-31107194,31107296-31107498
Length = 410
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 330 SRICIPERELHCRI*PQCPRTVFVMFAERVYVYAHWVVET 211
+R+C P++ L+ P C +++ +F + H ++ T
Sbjct: 265 ARLCKPKKSLNTTDAPHCRQSILRLFGQAAMGTMHGIINT 304
>09_04_0076 + 14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 207 LASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEK 332
LASLP + RI +RT K+ ++++ Y++ L+ Y K
Sbjct: 1411 LASLPIQAKHRINCIRTAIKRNMEVQNFAYAK-QMLDLLYSK 1451
>09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804
Length = 284
Score = 25.8 bits (54), Expect = 8.9
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +1
Query: 40 LWVQWNVLVMITHPM 84
+W +W+VL+ ++HP+
Sbjct: 78 IWFEWDVLMSLSHPL 92
>01_01_1010 -
7996921-7997673,7999212-7999399,7999688-7999784,
8000420-8000767,8001130-8001231,8001432-8001501,
8001747-8001802,8001891-8002010
Length = 577
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 132 KHLMKSGITRNEMLAAITSRIQVETLASLPPNVRKRIRA 248
+H + G+T + L+A+ I +E L L ++R +RA
Sbjct: 322 QHSVALGVTSEDRLSALLDDILLEILQRLADDLRSVVRA 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,229,693
Number of Sequences: 37544
Number of extensions: 130848
Number of successful extensions: 316
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -