Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M24
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    46   9e-06
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    28   2.0  
AC084153-14|AAK84588.1|  264|Caenorhabditis elegans Hypothetical...    27   2.7  
U00044-6|AAA50679.2|  670|Caenorhabditis elegans Bard homolog (t...    26   8.1  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 19/47 (40%), Positives = 32/47 (68%)
 Frame = +3

Query: 201 ETLASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYK 341
           + + +LP NV++R+ AL+ LQ + + IE+ FY  VH LE ++E  +K
Sbjct: 17  DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFK 63


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 222 PNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKLYK 341
           P+VRK ++  R L+K+  D++ +  + +  +E KY+++ K
Sbjct: 30  PSVRKALKEKRLLKKRKQDLKGQEETMLDEVEQKYQEMLK 69


>AC084153-14|AAK84588.1|  264|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.14 protein.
          Length = 264

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 250 RARIRLRTLGGRDASVSTWMRLVIAANISFRVIPLFMR 137
           RA I +      +AS+ TW  L +  NISF  IP + R
Sbjct: 114 RAEISVLGEMNAEASMKTWYDLGLPRNISFFGIPTYAR 151


>U00044-6|AAA50679.2|  670|Caenorhabditis elegans Bard homolog
           (tumor suppressorgene bard1) protein 1 protein.
          Length = 670

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 198 VETLASLPPNVRKRIRALRTLQKQFVDIEAKFYSEVHALECKYEKL 335
           VE +A   P +RK I   +T Q+    + A   S +H ++   EK+
Sbjct: 418 VEEMAKSDPKIRKIIEKFKTEQRVLQPVVAPPKSRLHFVQLIDEKM 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,162,512
Number of Sequences: 27780
Number of extensions: 116678
Number of successful extensions: 280
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)