Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M19
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 190 1e-49
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 185 3e-48
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.42
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 28 0.98
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 1.7
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 1.7
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 3.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 4.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 5.2
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 5.2
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 6.9
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 6.9
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 190 bits (463), Expect = 1e-49
Identities = 89/162 (54%), Positives = 119/162 (73%)
Frame = +3
Query: 39 MAAVKIKAFERRQEGCKKKIVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEG 218
MA K K + ++G KK++VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++
Sbjct: 1 MAVGKNKRLSKGKKGIKKRVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDS 60
Query: 219 LLGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 398
L GR+ EVSLADLQ D E SFRK +L ED+QG++ L +F+G D+T+DKLR +V+KWQ
Sbjct: 61 LKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQ 118
Query: 399 TLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQ 524
+ IEAN +KTTDGY+ R+F IGFT++ +KT YAQ +Q
Sbjct: 119 STIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQ 160
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 185 bits (451), Expect = 3e-48
Identities = 87/162 (53%), Positives = 118/162 (72%)
Frame = +3
Query: 39 MAAVKIKAFERRQEGCKKKIVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEG 218
MA K K + ++G KK++VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++
Sbjct: 1 MAVGKNKRLSKGKKGIKKRVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDS 60
Query: 219 LLGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 398
L GR+ EVSLADLQ D E +FRK +L ED+QG++ L +F+G+ +T+DKLR +V+KWQ
Sbjct: 61 LKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQ 118
Query: 399 TLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQ 524
T IEA+ +KTTDGY+ RVF IGFT + +KT YAQ +Q
Sbjct: 119 TTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQ 160
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 0.42
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 231 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 404
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 405 IEANIDVKTT 434
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.9 bits (59), Expect = 0.98
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 205 IFVPWVRLTRVVPTCLLVNMDGALTS-YQSLRVKGSTIFFLHPSCLLSKAFIFTAAMINP 29
IFV + +VP + A Y+S + G FF C+ ++FI ++ P
Sbjct: 505 IFVSILIALNIVPAAFIFGFSNATQQHYRSREIVGYVHFFFSIGCVAYQSFIPLPFLLGP 564
Query: 28 R 26
R
Sbjct: 565 R 565
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 229 RPNRPSDAIFVPWVRLTRVVPTCLLVNMDGALTSYQSLRVKGSTIFF 89
R + PSD+ F W +L R+V + + + LT YQ + K +FF
Sbjct: 1901 RLSSPSDSTFPLWAKLPRLVISEDVQGISQPLTVYQFI-CKAPDLFF 1946
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 151 SPRDKWAPPLSIAPREQKLHLRVYWGVFLRSPLL 252
SP W P LSI P ++++ YW + LL
Sbjct: 86 SPNSFWRPYLSIFPTKERITSPFYWDENKKDALL 119
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 456 FCIGFTNKDTLSQRKTCY 509
FC G NKDT+ K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 333 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTC 506
L + + + +T +++++ + N + K YV ++ G NK+T S RKTC
Sbjct: 1685 LLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTC 1742
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 176 PCQSHPGNKNCI*GSIGACF 235
PC H K C G GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 354 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 452
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 91 FLHPSCLLSKAFIFTAAMINPRPNSAARG 5
F+ P+ L+ K +F ++ +P P S +RG
Sbjct: 265 FVQPT-LIQKTILFISSYTSPNPESPSRG 292
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +3
Query: 375 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYA 512
++ W L+ T GYV+R GFT+ + + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,492
Number of Sequences: 5004
Number of extensions: 44290
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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