Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M19
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   204   2e-53
Z81449-11|CAD44106.2|  410|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z81449-10|CAB03766.4|  419|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z48241-6|CAD44100.2|  410|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z48241-5|CAA88286.4|  419|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    29   2.0  
U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine re...    29   2.7  
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    27   8.2  
AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical...    27   8.2  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  204 bits (499), Expect = 2e-53
 Identities = 99/147 (67%), Positives = 115/147 (78%)
 Frame = +3

Query: 75  QEGCKKKIVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLLGRVFEVSLAD 254
           ++G KKK VDPF+RK+WYD+KAP+MF  RQVG TL+NRTQGTKIASEGL GRVFEVSL D
Sbjct: 12  KKGGKKKAVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGD 71

Query: 255 LQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 434
           L   +++E  FRKF+LIAEDVQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTT
Sbjct: 72  L---NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTT 128

Query: 435 DGYVLRVFCIGFTNKDTLSQRKTCYAQ 515
           DGY LRVF I FT K     +KT Y +
Sbjct: 129 DGYTLRVFVIAFTKKSVNQVKKTSYTK 155


>Z81449-11|CAD44106.2|  410|Caenorhabditis elegans Hypothetical
           protein C32A3.3b protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 63  FERRQEGCKKKIVDPFTRKDWYD-VKAPSMFTKRQVGTT 176
           +ER+  G +K I  P  ++ W D V  P +F KR   TT
Sbjct: 338 YERKDSGVRKFIQFPLLQRLWSDGVPPPRIFCKRVSSTT 376


>Z81449-10|CAB03766.4|  419|Caenorhabditis elegans Hypothetical
           protein C32A3.3a protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 63  FERRQEGCKKKIVDPFTRKDWYD-VKAPSMFTKRQVGTT 176
           +ER+  G +K I  P  ++ W D V  P +F KR   TT
Sbjct: 347 YERKDSGVRKFIQFPLLQRLWSDGVPPPRIFCKRVSSTT 385


>Z48241-6|CAD44100.2|  410|Caenorhabditis elegans Hypothetical
           protein C32A3.3b protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 63  FERRQEGCKKKIVDPFTRKDWYD-VKAPSMFTKRQVGTT 176
           +ER+  G +K I  P  ++ W D V  P +F KR   TT
Sbjct: 338 YERKDSGVRKFIQFPLLQRLWSDGVPPPRIFCKRVSSTT 376


>Z48241-5|CAA88286.4|  419|Caenorhabditis elegans Hypothetical
           protein C32A3.3a protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 63  FERRQEGCKKKIVDPFTRKDWYD-VKAPSMFTKRQVGTT 176
           +ER+  G +K I  P  ++ W D V  P +F KR   TT
Sbjct: 347 YERKDSGVRKFIQFPLLQRLWSDGVPPPRIFCKRVSSTT 385


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -2

Query: 241  TSKTRPNRPSDAIFVPWVRLTRVVPTCLLVNMDGA 137
            TSK +P R  D I V   R T     CL V   GA
Sbjct: 2175 TSKAQPIRSDDVISVAGTRSTETTMKCLAVQFTGA 2209


>U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical
           protein T14B4.8 protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 208 AIFVPWVRLTRVVPTCLLVNMDGALTSYQSLRVKG 104
           + F+P++R  R VPT  +++ +G +  Y +L   G
Sbjct: 119 SFFIPFLRPRRTVPTFSIIDWNGEVLGYYALASDG 153


>AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 32 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 433 VVLTSMLASISVCHFFTIHLSLSVVRSMPWKLQRTLRPWTSSAISL 296
           V +  ++ ++ V H F+ H  L V   +PW    T R   + AISL
Sbjct: 60  VYIIFVILTMEVPHLFSNHRGLIVTLGLPWSNFATCRSAIALAISL 105


>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 139 RRPCSPRDKWAPPLSIAPREQKL 207
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 139 RRPCSPRDKWAPPLSIAPREQKL 207
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 139 RRPCSPRDKWAPPLSIAPREQKL 207
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 139 RRPCSPRDKWAPPLSIAPREQKL 207
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical
           protein T28D9.7 protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -1

Query: 446 DISVSGLNVNVGFNQCLPF-LYHPSELISGEVHAVEIAENITSLDILSD 303
           D S++G+NV  G++  +PF + H S+L    VH +E  EN   ++  +D
Sbjct: 296 DSSMNGVNVPSGYSMDIPFKMQHRSKLTG--VHCIE--ENDEQIEASTD 340


>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
            protein Y71A12B.4 protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +1

Query: 172  PPLSIAPREQKLHLRVYWGVFLRSPL--LISRLIVMR----KGLSASSDLSLRMSRDVMF 333
            PPL + P   K+ L++ +G+++   L  LI+ LI M     + + A SD   +  R ++ 
Sbjct: 1697 PPLHLVPDFAKIILKLLFGIYMMVTLIVLINLLIAMMSDTYQRIQAQSDKEWKFGRAILI 1756

Query: 334  SAISTAWTSP 363
              ++    +P
Sbjct: 1757 RQMNKKSATP 1766


>AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical
           protein Y34D9A.1 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 359 EVHAVEIAENITSLDILSDKSELAE 285
           E+H +E AE++ SL +L  KSE+ +
Sbjct: 63  EMHIIEPAEHMKSLKVLMQKSEIEQ 87


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 505 HVLRWLSVS----LLVKPMQKTRRTYPSVVLTSMLASISVCHFFTIHLSLS 365
           HV  WLS+      +   +  TR+   S  + S++ S+++C F ++ +S+S
Sbjct: 36  HVEFWLSIFGGILTIFHFLVLTRKAMKSTSIISLMISVAICDFLSMIVSIS 86


>AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical
           protein Y48G1C.7 protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 181 SIAPREQKLHLRVYWGVFLRSPLLISRLIVM 273
           SI PRE +L  ++Y+ +   S L++S  ++M
Sbjct: 15  SINPREPRLRKKIYYMMETESRLVVSHALIM 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,936
Number of Sequences: 27780
Number of extensions: 269900
Number of successful extensions: 717
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)