Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M18
         (260 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866     37   0.002
03_04_0070 + 17042509-17043129                                         33   0.032
06_02_0254 - 13517352-13517557,13517612-13519073                       27   1.6  
05_04_0313 + 20129358-20129777                                         27   1.6  
02_02_0237 - 8150491-8151066                                           27   2.1  
01_05_0114 + 18266556-18266834                                         26   4.8  
10_01_0254 - 2677811-2677911,2678132-2678313,2678646-2678694,268...    25   6.3  
03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196     25   6.3  
08_01_0369 - 3264479-3265051                                           25   8.4  

>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
          Length = 396

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 124 REPCPWRILDDSXXXXXXXXXXXXXXHSIKGFRNAPVG 237
           R+PCP RILDD               H +KG RN+P G
Sbjct: 232 RDPCPDRILDDIGASFGMGAVGGSFFHFVKGLRNSPSG 269



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 115 EYTREPCPWRILDDSXXXXXXXXXXXXXXHSIKGFRNAPVG 237
           E +REPCP RILDD               H +KG  N+P G
Sbjct: 5   ETSREPCPDRILDDVGGAFGMGAVGGSLFHFLKGTYNSPNG 45


>03_04_0070 + 17042509-17043129
          Length = 206

 Score = 33.1 bits (72), Expect = 0.032
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 124 REPCPWRILDDSXXXXXXXXXXXXXXHSIKGFRNAPVG 237
           REPCP RILDD               H ++G  N+P G
Sbjct: 6   REPCPDRILDDVGGAFAMGAVGGTAFHFLRGAYNSPNG 43


>06_02_0254 - 13517352-13517557,13517612-13519073
          Length = 555

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 141 AYP**FWRRVHYGSYRWW 194
           A P  FWRR  Y +YRW+
Sbjct: 381 AVPVLFWRRTAYDAYRWF 398


>05_04_0313 + 20129358-20129777
          Length = 139

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 237 SNRCISETFYRV--KYTTTYSSHNERAARIIKDTP 139
           ++R IS T  +V  +   TY   N+RA+RII  TP
Sbjct: 96  ASRIISRTLMKVAVREIATYWFENQRASRIISRTP 130


>02_02_0237 - 8150491-8151066
          Length = 191

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 237 SNRCISETFYRV--KYTTTYSSHNERAARIIKDTPRTRLSRVF 115
           ++R IS T  +V  + + TY   N+RA+RII  TP   L  V+
Sbjct: 96  ASRIISRTPMKVTVRESATYWFVNQRASRIISRTPMEVLELVY 138



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 237 SNRCISETFYRV--KYTTTYSSHNERAARIIKDTP 139
           ++R IS T   V  +   TY   N+RA+RII  TP
Sbjct: 44  ASRIISRTPMEVAVREIATYWFENQRASRIISRTP 78


>01_05_0114 + 18266556-18266834
          Length = 92

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 237 SNRCISETFYRV--KYTTTYSSHNERAARIIKDTP 139
           ++R IS+T   V  +   TY   N+RA+RII  TP
Sbjct: 18  ASRIISQTPMEVAVREIATYWFENQRASRIISRTP 52


>10_01_0254 -
           2677811-2677911,2678132-2678313,2678646-2678694,
           2680659-2680755,2681119-2681436
          Length = 248

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 237 SNRCISETFYRV--KYTTTYSSHNERAARIIKDTPRTRLS 124
           ++R IS T   V  +   TY   N+RA+RII  TP   ++
Sbjct: 70  ASRIISRTPMEVAVREIATYWFENQRASRIISRTPMEEIA 109


>03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196
          Length = 240

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 204 VKYTTTYSSHNERAARIIKDTP 139
           V+  TTY S ++R +RII  TP
Sbjct: 156 VREITTYWSEDQRTSRIISRTP 177


>08_01_0369 - 3264479-3265051
          Length = 190

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 237 SNRCISETFYRV--KYTTTYSSHNERAARIIKDTP 139
           ++R IS T   V  +   TY   N+RA+RII  TP
Sbjct: 18  ASRIISRTPMEVAVREIATYWFENQRASRIISRTP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,468,532
Number of Sequences: 37544
Number of extensions: 76752
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)