Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M18
(260 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-6|AAB92039.1| 181|Caenorhabditis elegans Hypothetical ... 40 2e-04
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 27 2.4
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 27 2.4
AL132860-20|CAB60503.2| 263|Caenorhabditis elegans Hypothetical... 26 4.2
Z83239-10|CAB05812.2| 324|Caenorhabditis elegans Hypothetical p... 25 7.4
AL032663-12|CAA21768.2| 324|Caenorhabditis elegans Hypothetical... 25 7.4
AF067211-16|AAC16988.3| 399|Caenorhabditis elegans Hypothetical... 25 7.4
AF026206-6|AAK39305.3| 167|Caenorhabditis elegans Hypothetical ... 25 7.4
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 25 7.4
Z48045-9|CAA88099.4| 309|Caenorhabditis elegans Hypothetical pr... 25 9.8
>AF038611-6|AAB92039.1| 181|Caenorhabditis elegans Hypothetical
protein E04A4.5 protein.
Length = 181
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 109 MDEYTREPCPWRILDDSXXXXXXXXXXXXXXHSIKGFRNAPVGFSRKMLG 258
M+EYTREPCP+RI DD + G++NA G +K++G
Sbjct: 1 MEEYTREPCPYRIGDDIGSAFAMGLVGGSIFQAFGGYKNAAKG--KKLVG 48
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 255 QHFSTESNRCIS-ETFYRVKYTTTYSSHNERAARIIKDTPRTRLSRVFIHI 106
Q ++N +S E YR YT H ER +KD + ++ V I I
Sbjct: 39 QEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLKDVIQDHMASVRIRI 89
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 255 QHFSTESNRCIS-ETFYRVKYTTTYSSHNERAARIIKDTPRTRLSRVFIHI 106
Q ++N +S E YR YT H ER +KD + ++ V I I
Sbjct: 39 QEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLKDVIQDHMASVRIRI 89
>AL132860-20|CAB60503.2| 263|Caenorhabditis elegans Hypothetical
protein Y56A3A.22 protein.
Length = 263
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 165 RVHYGSYRWWYISLYKRFQKCTCW 236
+V Y R+WYI++ CT W
Sbjct: 83 KVKYYFKRYWYIAVPAHAASCTAW 106
>Z83239-10|CAB05812.2| 324|Caenorhabditis elegans Hypothetical
protein T09F5.11 protein.
Length = 324
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 255 QHFSTESNRCISETFYRVKYTTTYSSHNERAARIIKDTPRTRLSRVF 115
+HF +++ +E + + T S+H + A + T L+RVF
Sbjct: 240 EHFKIKTDSFTTEDAIQTRDILTVSAHFQYAKLFFPENRSTELARVF 286
>AL032663-12|CAA21768.2| 324|Caenorhabditis elegans Hypothetical
protein T09F5.11 protein.
Length = 324
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 255 QHFSTESNRCISETFYRVKYTTTYSSHNERAARIIKDTPRTRLSRVF 115
+HF +++ +E + + T S+H + A + T L+RVF
Sbjct: 240 EHFKIKTDSFTTEDAIQTRDILTVSAHFQYAKLFFPENRSTELARVF 286
>AF067211-16|AAC16988.3| 399|Caenorhabditis elegans Hypothetical
protein B0205.4 protein.
Length = 399
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 79 YLFKKVYQKNMDEYTREPCPWRI 147
Y+ K V+ ++ +E T + CPW I
Sbjct: 42 YMKKNVFYQSGNEATLDNCPWPI 64
>AF026206-6|AAK39305.3| 167|Caenorhabditis elegans Hypothetical
protein T28B4.4 protein.
Length = 167
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +3
Query: 168 VHYGSYRWWYISLYKRFQKCTCWIQ 242
+H G Y+W + FQ+ W+Q
Sbjct: 38 LHMGIYQWGQAGANRSFQRSAGWLQ 62
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 83 SLRRFIKKIWMNTRESLVRGVS 148
S+R+F+K W N+R++L R ++
Sbjct: 2715 SVRKFMKLWWYNSRDTLERFIT 2736
>Z48045-9|CAA88099.4| 309|Caenorhabditis elegans Hypothetical
protein C41C4.2 protein.
Length = 309
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 80 ISLRRFIKKIWMNTRESLV-RGVSLMILAARSL 175
+++ RF+ IW++T ES+ + VS+++ + S+
Sbjct: 68 LAVERFLATIWVSTYESVQHKWVSIVLTSTNSI 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,964,132
Number of Sequences: 27780
Number of extensions: 72963
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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