Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M17
         (90 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    24   2.3  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    23   7.1  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    22   9.4  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 3   TRLQTNHTLTYCTRNNSSSHIKYFKTM 83
           T   TNH+    TRN+S +H  Y  T+
Sbjct: 95  TMSYTNHSPANLTRNSSFNHQHYSTTL 121


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 6   RLQTNHTLTYCTRNNSSSHIKYFKTMVY 89
           R + N      +RN  S+H+ Y + M+Y
Sbjct: 55  RRRMNRRRNERSRNFPSNHLSYLEDMIY 82


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +1

Query: 1   ARGFKLTIHLLIVHEIIHQVILSILKRW 84
           A G++ +  L + H  +H++I+   ++W
Sbjct: 134 AMGYRDSYLLFLKHRSLHKIIVDDSEKW 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,469
Number of Sequences: 5004
Number of extensions: 2252
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 11
effective length of database: 2,307,434
effective search space used: 41533812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)