Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M17
         (90 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0582 + 30124280-30124487,30124600-30124698,30125438-301255...    25   8.3  

>02_05_0582 +
           30124280-30124487,30124600-30124698,30125438-30125589,
           30125708-30125896,30126001-30126111,30126370-30126536,
           30127923-30128184
          Length = 395

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   GFKLTIHLLIVHEIIHQVILSILKRWCM 90
           GFK  I L ++H  +  V+++ILK   M
Sbjct: 159 GFKFPIALSLIHYAVAFVLMAILKTMSM 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,594
Number of Sequences: 37544
Number of extensions: 11989
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 14,793,348
effective HSP length: 11
effective length of database: 14,380,364
effective search space used: 258846552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)