Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M16
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    25   1.4  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    24   3.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   4.2  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    23   7.3  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    22   9.6  

>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 23  FGTRIHRLTQTYXPSLXHGMAPGRRR 100
           F    HR  Q   PSL HG+  G  R
Sbjct: 143 FNVAFHRNGQWITPSLKHGLLSGTMR 168


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 100 PPPTRGHTVX*RRXIXLSQSMNPRAEXPA 14
           PP TR +    R  + L  S+NP +  P+
Sbjct: 421 PPITRSYNAKHRPSLVLGTSVNPHSLSPS 449


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 86  PGRRRDMRQWPPPPTLVDTSNAVQAY 163
           P R   M Q PPPP+   + +  Q Y
Sbjct: 142 PVRPNVMSQMPPPPSYSSSGSYSQTY 167


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 135 LIQVMPYKPT*FRGLIPSFQSKL 203
           ++Q+  Y PT    +IP F+++L
Sbjct: 264 VLQLWKYAPTTLLNIIPQFENEL 286


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 141 QVMPYKPT*FRGLIPSFQSKLYKL 212
           +V+P+    +  LI SF+ KLY L
Sbjct: 325 EVIPFSFNPYNDLIFSFKEKLYPL 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 776,135
Number of Sequences: 5004
Number of extensions: 11481
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)