Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M16
(212 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411... 30 0.22
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 26 3.6
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 26 3.6
01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574 26 3.6
03_05_0627 - 26240673-26241318,26241713-26242536 26 4.8
09_04_0295 - 16454862-16455035,16455122-16455264,16455393-164559... 25 6.3
08_02_1595 - 28114751-28114858,28115018-28115283,28116609-281167... 25 6.3
01_05_0166 + 18844468-18845184,18847394-18847690 25 6.3
12_02_0655 + 21588662-21589051 25 8.3
12_02_0528 + 20059613-20061472 25 8.3
07_03_1636 + 28290642-28291574 25 8.3
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641... 25 8.3
>01_06_1342 -
36438869-36439459,36439567-36439627,36440751-36441130,
36441955-36442761
Length = 612
Score = 30.3 bits (65), Expect = 0.22
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 74 HGMAPGRRRDMRQWPPPPTLVDTSNAVQAY 163
HG AP +++ WPPPP +++ +Y
Sbjct: 85 HGHAPQQQQQHGSWPPPPAFYSYASSSSSY 114
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 11 GCRXFGTRIHRLTQTYXPSLXHGMAPGRRRDMRQWPPPP 127
G R T I L + + +A R+RD PPPP
Sbjct: 275 GQRMIKTGISLLASVHMQTRSRELAAARQRDTHAAPPPP 313
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 62 PSLXHGMAPGRRRDMRQWPPPP 127
PS G R R + +WPPPP
Sbjct: 44 PSSPPGPGRSRSRGISRWPPPP 65
>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
Length = 212
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -1
Query: 149 HYLYQLRLAVEAI--VAYPAAYPGPYR 75
HYLY A+ ++YPA YP P R
Sbjct: 114 HYLYTTTAPPSALHPMSYPATYPAPPR 140
>03_05_0627 - 26240673-26241318,26241713-26242536
Length = 489
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 101 DMRQWPPPPTLVDTSNAVQAY 163
D+ +PPPP L++ V+ Y
Sbjct: 152 DLTPYPPPPPLIEEEQEVKTY 172
>09_04_0295 -
16454862-16455035,16455122-16455264,16455393-16455939,
16456006-16456332
Length = 396
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 77 GMAPGRRRDMRQWPPPPTLVD-TSNAVQAYLV*R 175
G + RRR PPPP LVD S A++ L R
Sbjct: 209 GRSRERRRQPSSPPPPPPLVDRVSRALEIALAMR 242
>08_02_1595 -
28114751-28114858,28115018-28115283,28116609-28116703,
28117179-28118154,28118245-28118369,28118443-28118569,
28118606-28118843
Length = 644
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = +2
Query: 26 GTRIHRLTQTYXPSLXHGMA--PGRRRDMRQWPPPPTLVDTSNAVQAYLV*R 175
GTR R T P PG+ +R PPPP+ + Y + R
Sbjct: 5 GTRTRRRAATASPGRNKVWVEPPGKTHHLRSPPPPPSPSSSKRVAVVYYLCR 56
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +2
Query: 62 PSLXHGMAPGRRRDMRQWPPPPTL---VDTSNAVQAYLV 169
PS+ P + Q PPPPTL TS + Q LV
Sbjct: 17 PSVLRNSRPAPKAPAAQPPPPPTLPIETTTSTSFQPALV 55
>12_02_0655 + 21588662-21589051
Length = 129
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 65 SLXHGMAPGRRRDMRQWP 118
S+ G+APGRRR+ R+ P
Sbjct: 47 SVAVGVAPGRRRESRRRP 64
>12_02_0528 + 20059613-20061472
Length = 619
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 107 RQWPPPPTLVDTSNAVQA 160
++WPP P+L D N A
Sbjct: 153 KEWPPDPSLPDIKNGAYA 170
>07_03_1636 + 28290642-28291574
Length = 310
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = -1
Query: 188 AGYQPSKLGRL----VRHYLYQLR--LAVEAIVAYPAAYPGPYRVXKT 63
A YQ KL R V H Y+L +A +++ AYPA P P ++ +T
Sbjct: 114 ASYQVRKLHRSETRGVLHLSYRLGPVVAPQSVFAYPAPPPPPPQLFET 161
>02_04_0199 -
20861793-20862023,20862588-20862798,20863260-20864142,
20864363-20865608
Length = 856
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 38 HRLTQTYXPSLXHGMAPGRRRDMR-QWPPPPTLVDTSNA 151
H T + GM P RRR +R PP P L+ ++ A
Sbjct: 444 HPPLPTVAAAAAAGMPPRRRRRVRPPLPPSPPLLSSTTA 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,109,879
Number of Sequences: 37544
Number of extensions: 109374
Number of successful extensions: 401
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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