Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M16
         (212 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ...    27   1.4  
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    26   4.2  
AF000196-7|AAC24251.2|  706|Caenorhabditis elegans Hypothetical ...    26   4.2  

>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y66H1B.3 protein.
          Length = 1084

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 65  SLXHGMAPGRRRDMRQWPPPPTLVDTSNAVQA 160
           +L + MAPG   D   W P   L +T  A+++
Sbjct: 184 ALVNSMAPGALEDWENWSPNDALENTEKAMKS 215


>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
           protein F22E10.3 protein.
          Length = 1327

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 182 YQPSKLGRLVRHYLYQLRLAVEAIVAYPAAYPGPYRVXK 66
           Y PS L +++ + L +  +A + + A P + PG +R  K
Sbjct: 60  YTPSLLEKILNYALCRGDIANQQLEAQPVSIPGLFRYGK 98


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
           related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 182 YQPSKLGRLVRHYLYQLRLAVEAIVAYPAAYPGPYRVXK 66
           Y PS L +++ + L +  +A + + A P + PG +R  K
Sbjct: 60  YTPSLLEKILNYALCRGDIANQQLEAQPVSIPGLFRYGK 98


>AF000196-7|AAC24251.2|  706|Caenorhabditis elegans Hypothetical
           protein B0041.2a protein.
          Length = 706

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 74  HGMAPGRRRDMRQWPPPPTL 133
           HG  P + + M Q+PPPP +
Sbjct: 51  HGFRPQQGQFMPQYPPPPPM 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,465,721
Number of Sequences: 27780
Number of extensions: 71923
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)