Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M15
(414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 134 7e-33
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 134 7e-33
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 29 0.22
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.50
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 27 0.87
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc... 25 3.5
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 24 8.1
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 24 8.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 24 8.1
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 134 bits (323), Expect = 7e-33
Identities = 62/92 (67%), Positives = 75/92 (81%)
Frame = +2
Query: 98 KRGTGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 277
+ TG KRA RKKRK+ELGR +NT++GP+RIH VR RGGN K+RALRLD+GNF+WGSE
Sbjct: 11 RSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSE 70
Query: 278 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 373
++KTRII V Y+ SNNELVRT TL K+AIV
Sbjct: 71 GVSKKTRIIQVAYHPSNNELVRTNTLTKSAIV 102
Score = 25.4 bits (53), Expect = 3.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 378 VDATPFRQWYES 413
+DA PFR WYE+
Sbjct: 104 IDAAPFRVWYET 115
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 134 bits (323), Expect = 7e-33
Identities = 62/92 (67%), Positives = 75/92 (81%)
Frame = +2
Query: 98 KRGTGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 277
+ TG KRA RKKRK+ELGR +NT++GP+RIH VR RGGN K+RALRLD+GNF+WGSE
Sbjct: 11 RSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSE 70
Query: 278 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 373
++KTRII V Y+ SNNELVRT TL K+AIV
Sbjct: 71 GVSKKTRIIQVAYHPSNNELVRTNTLTKSAIV 102
Score = 25.4 bits (53), Expect = 3.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 378 VDATPFRQWYES 413
+DA PFR WYE+
Sbjct: 104 IDAAPFRVWYET 115
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 29.5 bits (63), Expect = 0.22
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 149 ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRI 301
EL +N + Q+ L+ S T YRA+ LDTG+ E + K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 28.3 bits (60), Expect = 0.50
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 397 LKGVASTHDNSILYQGFGTHQFIVRGIINNI 305
LK + +NS+ +Q F +H FI R +IN I
Sbjct: 533 LKFMQRNFENSLYHQSFSSHWFISRLLINPI 563
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 0.87
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 170 WQPGDLTHTSSSYEWAHVC 114
W PG SS++W HVC
Sbjct: 278 WSPGKYDVFGSSHQWFHVC 296
>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 3.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 222 LPPRDLTKWMRWG-PSLVLAAGRPNSYFLFLRMGARLP-PVPLL 97
L P+D+ KW RW PSL + S + + M +++ VPL+
Sbjct: 32 LSPQDILKWCRWTLPSLFQTSALGLSGLVIMDMLSKMDMNVPLI 75
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 24.2 bits (50), Expect = 8.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 327 LEAL*TTSIIRVLRVEHSDPHAKFPVSRR 241
LE + T S +V R H DP K P RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 24.2 bits (50), Expect = 8.1
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 264 AKFPVSRRRA-RYLVLPPRDLTKW 196
AK P+ +RR + L+L RDLT W
Sbjct: 420 AKKPILKRRTPQELLLSGRDLTPW 443
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 24.2 bits (50), Expect = 8.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 268 PCEVSSIKTQGTIFSVTTTGSD 203
P V+SIK GT FS G+D
Sbjct: 768 PTAVASIKVSGTEFSTLLHGND 789
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,860
Number of Sequences: 5004
Number of extensions: 37734
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -