Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M15
         (414 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8 prot...   169   4e-42
BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8 pr...   169   4e-42
AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8 pr...   169   4e-42
AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8 pr...   169   4e-42
AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8 pr...   109   3e-24
CR457098-1|CAG33379.1|  334|Homo sapiens complete cds, incl. sto...    29   8.1  
BC077728-1|AAH77728.1|  382|Homo sapiens zinc finger protein 787...    29   8.1  
BC010466-1|AAH10466.1|  334|Homo sapiens beta-1,3-glucuronyltran...    29   8.1  
AF000560-1|AAB58413.1|  385|Homo sapiens TTF-I interacting pepti...    29   8.1  
AB029396-1|BAA96077.1|  334|Homo sapiens glucuronyltransferase p...    29   8.1  

>X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  169 bits (410), Expect = 4e-42
 Identities = 78/93 (83%), Positives = 83/93 (89%)
 Frame = +2

Query: 98  KRGTGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 277
           +R TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD GNF+WGSE
Sbjct: 11  RRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSE 70

Query: 278 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 376
           C TRKTRIIDVVYNASNNELVRTKTLVKN IV+
Sbjct: 71  CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVL 103



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 378 VDATPFRQWYES 413
           +D+TP+RQWYES
Sbjct: 104 IDSTPYRQWYES 115


>BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  169 bits (410), Expect = 4e-42
 Identities = 78/93 (83%), Positives = 83/93 (89%)
 Frame = +2

Query: 98  KRGTGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 277
           +R TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD GNF+WGSE
Sbjct: 11  RRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSE 70

Query: 278 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 376
           C TRKTRIIDVVYNASNNELVRTKTLVKN IV+
Sbjct: 71  CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVL 103



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 378 VDATPFRQWYES 413
           +D+TP+RQWYES
Sbjct: 104 IDSTPYRQWYES 115


>AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  169 bits (410), Expect = 4e-42
 Identities = 78/93 (83%), Positives = 83/93 (89%)
 Frame = +2

Query: 98  KRGTGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 277
           +R TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD GNF+WGSE
Sbjct: 11  RRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSE 70

Query: 278 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 376
           C TRKTRIIDVVYNASNNELVRTKTLVKN IV+
Sbjct: 71  CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVL 103



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 378 VDATPFRQWYES 413
           +D+TP+RQWYES
Sbjct: 104 IDSTPYRQWYES 115


>AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  169 bits (410), Expect = 4e-42
 Identities = 78/93 (83%), Positives = 83/93 (89%)
 Frame = +2

Query: 98  KRGTGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 277
           +R TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD GNF+WGSE
Sbjct: 11  RRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSE 70

Query: 278 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 376
           C TRKTRIIDVVYNASNNELVRTKTLVKN IV+
Sbjct: 71  CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVL 103



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 378 VDATPFRQWYES 413
           +D+TP+RQWYES
Sbjct: 104 IDSTPYRQWYES 115


>AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8
           protein.
          Length = 188

 Score =  109 bits (263), Expect = 3e-24
 Identities = 62/93 (66%), Positives = 66/93 (70%)
 Frame = +2

Query: 98  KRGTGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 277
           +R TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGG                   
Sbjct: 11  RRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG------------------- 51

Query: 278 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 376
           C TRKTRIIDVVYNASNNELVRTKTLVKN IV+
Sbjct: 52  C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVL 83



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 378 VDATPFRQWYES 413
           +D+TP+RQWYES
Sbjct: 84  IDSTPYRQWYES 95


>CR457098-1|CAG33379.1|  334|Homo sapiens complete cds, incl.
           stopcodon.   protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 73  ILALVRSQRIHVAPPPWSKLVP 8
           I+ +VR++ ++  PPPWS  +P
Sbjct: 63  IVEVVRTEYVYTRPPPWSDTLP 84


>BC077728-1|AAH77728.1|  382|Homo sapiens zinc finger protein 787
           protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 132 RMGARLPPVPLLANDHD*YPSWPSSDLSGSMLRRPRG 22
           +M +   PV +L  D D  PSWP + LS      P G
Sbjct: 19  QMASHENPVDILIMDDDDVPSWPPTKLSPPQSAPPAG 55


>BC010466-1|AAH10466.1|  334|Homo sapiens
           beta-1,3-glucuronyltransferase 1
           (glucuronosyltransferase P) protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 73  ILALVRSQRIHVAPPPWSKLVP 8
           I+ +VR++ ++  PPPWS  +P
Sbjct: 63  IVEVVRTEYVYTRPPPWSDTLP 84


>AF000560-1|AAB58413.1|  385|Homo sapiens TTF-I interacting peptide
           20 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 132 RMGARLPPVPLLANDHD*YPSWPSSDLSGSMLRRPRG 22
           +M +   PV +L  D D  PSWP + LS      P G
Sbjct: 22  QMASHENPVDILIMDDDDVPSWPPTKLSPPQSAPPAG 58


>AB029396-1|BAA96077.1|  334|Homo sapiens glucuronyltransferase
           protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 73  ILALVRSQRIHVAPPPWSKLVP 8
           I+ +VR++ ++  PPPWS  +P
Sbjct: 63  IVEVVRTEYVYTRPPPWSDTLP 84


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,850,043
Number of Sequences: 237096
Number of extensions: 1634921
Number of successful extensions: 3511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3511
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)