Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M15
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 138 1e-33
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.11
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.11
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.11
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.11
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.11
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.11
Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 26 9.4
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 26 9.4
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 26 9.4
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 26 9.4
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 26 9.4
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 26 9.4
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 26 9.4
AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical ... 26 9.4
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 138 bits (335), Expect = 1e-33
Identities = 65/93 (69%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Frame = +2
Query: 98 KRGTGGKRAPI-RKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGS 274
KR G P+ KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRLD+GNF+W S
Sbjct: 10 KRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWAS 69
Query: 275 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 373
E +TRKTRI+D +YNA+NNELVRTKTLVK AI+
Sbjct: 70 EQTTRKTRIVDTMYNATNNELVRTKTLVKGAII 102
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 378 VDATPFRQWYES 413
VDA PFRQWYE+
Sbjct: 104 VDAAPFRQWYEA 115
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 236 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 340
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 236 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 340
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 236 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 340
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 236 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 340
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 236 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 340
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 236 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 340
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical
protein M03C11.2 protein.
Length = 848
Score = 27.1 bits (57), Expect = 5.4
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = +2
Query: 203 VRSRGGNTKYRALRLDTGNFAWGSECST-----RKTRIIDVVYNASNNELVRTKTLVKNA 367
+R G + K + +L+ G C+T T+I DVV +N+L T + K
Sbjct: 243 LRKNGMSEKEKVQKLEKGTTKKTKTCATSCEFYNSTQIEDVVNGVLSNKLKSTLEVSKQG 302
Query: 368 IVVRGCHAF 394
+ GC F
Sbjct: 303 KLSNGCPYF 311
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 149 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 280
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 149 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 280
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 201 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 112
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 201 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 112
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 20 TPRGRRNMDPLRSDEGQDGYQS*SLAKRGTGGKRAPIRKKRK 145
+PR R P R +D +S R + R+P+R+ R+
Sbjct: 93 SPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRR 134
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 20 TPRGRRNMDPLRSDEGQDGYQS*SLAKRGTGGKRAPIRKKRK 145
+PR R P R +D +S R + R+P+R+ R+
Sbjct: 93 SPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRR 134
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 20 TPRGRRNMDPLRSDEGQDGYQS*SLAKRGTGGKRAPIRKKRK 145
+PR R P R +D +S R + R+P+R+ R+
Sbjct: 93 SPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRR 134
>AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical
protein Y39E4B.10 protein.
Length = 581
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 12 TSLLHGGGATWIR*DRTRAKMGISRDH 92
+S+ GG W D+T AKM I +H
Sbjct: 239 SSMTKLGGIAWFNIDKTFAKMAIQMNH 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,456,788
Number of Sequences: 27780
Number of extensions: 222524
Number of successful extensions: 547
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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