Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M15
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   180   8e-48
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   3.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   4.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.3  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  180 bits (437), Expect = 8e-48
 Identities = 83/92 (90%), Positives = 88/92 (95%)
 Frame = +2

Query: 98  KRGTGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSE 277
           +R TGGKR PIRKKRK+ELGRPAANTKLGPQRIH VR+RGGN KYRALRLDTGNF+WGSE
Sbjct: 11  RRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSE 70

Query: 278 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 373
           C+TRKTRIIDVVYNASNNELVRTKTLVKNAIV
Sbjct: 71  CTTRKTRIIDVVYNASNNELVRTKTLVKNAIV 102



 Score = 29.9 bits (64), Expect = 0.012
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 378 VDATPFRQWYE 410
           +DATPFRQWYE
Sbjct: 104 IDATPFRQWYE 114


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 319 IINNINNTSLAG 284
           +INN NNTS+ G
Sbjct: 488 VINNRNNTSMKG 499


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 299 YESCGLNIQIPMRSFQYQD 243
           YE CGL  + PM SFQ  D
Sbjct: 653 YE-CGLRFEDPMISFQPGD 670


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 297 VLLMLFIMPLTMNWCVPKPW 356
           +L+   +MPL + W +   W
Sbjct: 85  LLVTFLMMPLEIGWAITVSW 104


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 89  ITTDTHLGPRPISADPC 39
           + T TH G +P + D C
Sbjct: 221 VHTRTHTGEKPYTCDIC 237


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 282 QPARLVLLMLFIMPLTMNW 338
           QP  L+ L+   MPL  NW
Sbjct: 491 QPEPLIELIEHWMPLLPNW 509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,830
Number of Sequences: 438
Number of extensions: 2741
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)