Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M14
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 120 9e-29
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 2.8
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 2.8
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 4.9
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 6.5
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 8.6
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 8.6
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 24 8.6
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 24 8.6
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 24 8.6
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 24 8.6
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 120 bits (289), Expect = 9e-29
Identities = 58/97 (59%), Positives = 70/97 (72%)
Frame = +1
Query: 130 VAAAPLSVKKVEPKKIVNPLFEKRTMNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQ 309
VA +P + K K NPLF R +F IGQDIQP RDLSRFV+WP+YIR+QR++ +L
Sbjct: 8 VAPSPFAQPKAA-KTTKNPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILN 66
Query: 310 RRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEA 420
RLKVPP I QF +TLDK TA +FK+L KYRPET A
Sbjct: 67 LRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAA 103
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 2.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 295 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 396
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 308 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 406
S V R Q+TSSP + ++PQ KV + + G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 4.9
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +1
Query: 367 TAKGLFKILEKYR 405
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 305 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 207
N F R +R+YF + DRSL + W ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 313 RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVR 426
RL + P+ F KTTAK L + + RP+ E +R
Sbjct: 455 RLSLNRPVRVFVDN-KKTTAKLLTQEFVRVRPQRELLR 491
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 24.2 bits (50), Expect = 8.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 181 NPLFEKRTMNFAIGQDIQPTRDL 249
+P+F KRT +F Q ++ T+++
Sbjct: 315 SPVFRKRTSSFYFSQPLKATKEV 337
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 24.2 bits (50), Expect = 8.6
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 145 LSVKKVEPKKIVNPLFEKRTMNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 321
L V+K EPKK+ P K ++ ++++ R+ R R K ++ QK LK
Sbjct: 498 LEVEKTEPKKLARPAKIKNEA-WSKQKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLK 555
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 24.2 bits (50), Expect = 8.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 163 EPKKIVNPLFEKRTMNFAIGQDIQPTRDLSRFV 261
E +K + FE+R FA IQP D+ V
Sbjct: 172 EQRKKLREEFERRNRMFASSARIQPNEDVQSVV 204
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 293 KRLCYSVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKL 415
K+L ++ K R Q T SP P + SW + GQ+L
Sbjct: 140 KQLVRDILEKAR-QHTISPLDEQDSGPSSLASSWASVGQRL 179
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 24.2 bits (50), Expect = 8.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Frame = -2
Query: 221 PIAKFIVLFS------NRGFTIFLGSTFFTESGAAATF-FPIFFL 108
P A ++ LF GFT+F+G TF + AA PIF +
Sbjct: 454 PYATYLTLFLLALITLTNGFTVFVGHTFTAGNFIAAYITLPIFLV 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,105
Number of Sequences: 5004
Number of extensions: 33600
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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