Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M14
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 121 3e-28
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 117 5e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 103 6e-23
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 1.2
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 29 1.2
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 4.8
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 27 4.8
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 27 8.3
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 121 bits (291), Expect = 3e-28
Identities = 55/96 (57%), Positives = 72/96 (75%)
Frame = +1
Query: 139 APLSVKKVEPKKIVNPLFEKRTMNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRL 318
AP+ KK + +K+ NPLFEKR F IG + P +DL RFV+WPK +RIQRQ+ +L++RL
Sbjct: 9 APVPAKK-KTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRL 67
Query: 319 KVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVR 426
KVPP +NQFT+TLDK A LFK+L KYRPE +A +
Sbjct: 68 KVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAK 103
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 117 bits (281), Expect = 5e-27
Identities = 51/86 (59%), Positives = 66/86 (76%)
Frame = +1
Query: 169 KKIVNPLFEKRTMNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 348
+K+ NPLFEKR F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT
Sbjct: 2 EKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFT 61
Query: 349 QTLDKTTAKGLFKILEKYRPETEAVR 426
+TLDK A LFK+L KYRPE +A +
Sbjct: 62 RTLDKNLATNLFKMLLKYRPEDKAAK 87
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 103 bits (247), Expect = 6e-23
Identities = 49/95 (51%), Positives = 64/95 (67%)
Frame = +1
Query: 133 AAAPLSVKKVEPKKIVNPLFEKRTMNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQR 312
A AP+ +K VNPLFEKR F IG + P +DL RFVRWPK +RIQRQ+ VL++
Sbjct: 7 AKAPVPARKKAAAAAVNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQ 66
Query: 313 RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETE 417
RLKVPP +NQFT+TLDK ++L++ + E E
Sbjct: 67 RLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEAE 101
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +1
Query: 208 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 375
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 376 GLFKILEK 399
+L+K
Sbjct: 412 AAKDVLQK 419
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 171 EDCKPSIREENNELCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSA 326
ED + + E+N+L +W A S PF A P + V +SS A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 231 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 338
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>02_04_0226 + 21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -1
Query: 216 SKVHCSLLE*RVYNLLGLNFLHRKWSGRYFFPYXXXXXXXXXLEWILT 73
S+ LLE + G+ +L + ++ RY FP +WI T
Sbjct: 857 SRARIQLLEPIIKGSGGVEYLQKAFADRYGFPSNASVALRSTAQWIST 904
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 297 LLTLDANIFRPSHETG*ISGWL 232
LLT + N RPSH + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,575,084
Number of Sequences: 37544
Number of extensions: 228528
Number of successful extensions: 650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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