Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M14
(426 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 128 2e-30
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 128 2e-30
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 127 3e-30
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 106 6e-24
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 31 0.46
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 31 0.46
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 31 0.46
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 31 0.46
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 29 1.1
U88170-10|AAB42242.2| 340|Caenorhabditis elegans Serpentine rec... 28 2.4
U39849-10|AAA81054.3| 951|Caenorhabditis elegans Glutamate rece... 27 7.4
Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical pr... 26 9.8
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 128 bits (309), Expect = 2e-30
Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 3/100 (3%)
Frame = +1
Query: 130 VAAAPLSVKKVEP--KKIVNPLFEKRTMNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAV 303
VAA P ++ K++ NPLFEKR NF IGQDIQP +D++RFV+WPKYIR+QRQ A+
Sbjct: 11 VAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAI 70
Query: 304 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE-TEA 420
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE TEA
Sbjct: 71 LQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEA 110
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 128 bits (309), Expect = 2e-30
Identities = 59/100 (59%), Positives = 75/100 (75%), Gaps = 2/100 (2%)
Frame = +1
Query: 130 VAAAPLSVKKVEP--KKIVNPLFEKRTMNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAV 303
VAA P ++ K++ NPLFEKR NF IGQDIQP +D++RFV+WPKYIR+QRQ A+
Sbjct: 11 VAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAI 70
Query: 304 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAV 423
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ V
Sbjct: 71 LQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEV 110
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 127 bits (307), Expect = 3e-30
Identities = 58/101 (57%), Positives = 75/101 (74%), Gaps = 2/101 (1%)
Frame = +1
Query: 130 VAAAPLSVKKVEP--KKIVNPLFEKRTMNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAV 303
VAA P ++ K++ NPLFEKR NF IGQDIQP +D++RFV+WPKYIR+QRQ A+
Sbjct: 114 VAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAI 173
Query: 304 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVR 426
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+ +
Sbjct: 174 LQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPESSEAK 214
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 106 bits (255), Expect = 6e-24
Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 2/79 (2%)
Frame = +1
Query: 130 VAAAPLSVKKVEP--KKIVNPLFEKRTMNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAV 303
VAA P ++ K++ NPLFEKR NF IGQDIQP +D++RFV+WPKYIR+QRQ A+
Sbjct: 114 VAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAI 173
Query: 304 LQRRLKVPPPINQFTQTLD 360
LQ+RLKVPP INQF LD
Sbjct: 174 LQKRLKVPPTINQFRTALD 192
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 30.7 bits (66), Expect = 0.46
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +3
Query: 117 DREKSSGRSTFGEES*AQEDCKPSIREENNELCYWPGHPANQRSIPFRAMAEIYSHPASK 296
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 31 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 297 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
G AS+Q++ A+ P++ + + QD+
Sbjct: 89 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 30.7 bits (66), Expect = 0.46
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +3
Query: 117 DREKSSGRSTFGEES*AQEDCKPSIREENNELCYWPGHPANQRSIPFRAMAEIYSHPASK 296
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 297 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 30.7 bits (66), Expect = 0.46
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +3
Query: 117 DREKSSGRSTFGEES*AQEDCKPSIREENNELCYWPGHPANQRSIPFRAMAEIYSHPASK 296
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 297 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 30.7 bits (66), Expect = 0.46
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +3
Query: 117 DREKSSGRSTFGEES*AQEDCKPSIREENNELCYWPGHPANQRSIPFRAMAEIYSHPASK 296
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 297 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 392
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 242 LVGWMSWPIAKF--IVLFSNRGFTIFLGSTFFTESGAAATFFPI 117
LVGW +W I F ++L SNR F +F + A + F I
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVFFPHVYSRNYRYAPSSFGI 140
>U88170-10|AAB42242.2| 340|Caenorhabditis elegans Serpentine
receptor, class h protein50 protein.
Length = 340
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 191 NRGFTIFLGSTFFTESGAA--ATFFPIFFLGFFCTILN 84
N FTIF F + S + PI FLGF+C I +
Sbjct: 13 NSSFTIFATPEFLSISSKIEFSIILPINFLGFYCIIFH 50
>U39849-10|AAA81054.3| 951|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 4 protein.
Length = 951
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 122 PIFFLGFFCTILNGF*LSDLTATNRYVTYSEHQNYRLK 9
P G F +L G ++ L A Y S H+ +RLK
Sbjct: 796 PQNIFGIFYVLLTGLIVAFLLACGEYCIESRHEAFRLK 833
>Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical
protein K03A11.4 protein.
Length = 664
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 232 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 408
+PT D+S +++ ++ + + Q R +P ++ FT +D + K+ E RP
Sbjct: 188 KPTIDISSLMQFDVFVILLDSLSYSQGRRALPRTLSYFTNHMDGVIFPYVNKVGENSRP 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,567,008
Number of Sequences: 27780
Number of extensions: 187258
Number of successful extensions: 483
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -