Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M13
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    71   7e-14
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    38   8e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    31   0.071
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    30   0.16 
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    30   0.16 
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   0.87 
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    27   1.2  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    27   1.5  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    27   1.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   2.7  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   4.7  
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni...    24   8.1  

>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 70.9 bits (166), Expect = 7e-14
 Identities = 38/79 (48%), Positives = 48/79 (60%)
 Frame = +3

Query: 174 MAAFATVLGILLFFAVAQSEDSPKGPKVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTVD 353
           M  F   L   LFF +  +    +GPKVT  V F ++ GDE +G + IGLFGKTVPKT +
Sbjct: 1   MKLFYFSLLFTLFFGLISAN---RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAE 57

Query: 354 NFYQLAQKPEGEGYKGSKF 410
           NF  LA   +G GY+GS F
Sbjct: 58  NFRALATGEKGFGYEGSIF 76


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 37.5 bits (83), Expect = 8e-04
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +3

Query: 273 FHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEGYKGSKF 410
           F +    + +G IV  LF   VPKT  NF  L    +G GY GS F
Sbjct: 6   FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTF 51


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 31.1 bits (67), Expect = 0.071
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 291 DEAVGNIVIGLFGKTVPKTVDNFYQLAQ 374
           +  VG++VI LF K  PKT +NF +L +
Sbjct: 6   ETTVGDLVIDLFVKEAPKTCENFLKLCK 33


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 297 AVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEG 392
           ++G I+I L+ +  PKT  NFY LA++   +G
Sbjct: 9   SLGKILIELYTEHAPKTCQNFYTLAKEGYYDG 40


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
 Frame = +3

Query: 258 THKVTF-HMKIGDEAVGNIVIGLFGKTVPKTVDNFYQ------LAQKPEGEGYKGSKF 410
           T  V F  + I    +G I I LF   VPKT +NF Q      L    +  GYK S F
Sbjct: 3   TEPVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTF 60


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -1

Query: 395 VALSLWFLCQLIEVVYSLRNSLAEKTN------NNVPYCFITNFHVKSYLMSNFRSFRRI 234
           + ++L F+C ++  +   R  +++K        + + YCF+    VKS L+S  RS  + 
Sbjct: 136 IGVTLTFICPMLSFLLCFRIIISQKAALVSIGISTLYYCFVQFMEVKSALISYDRSLFKF 195

Query: 233 F 231
           +
Sbjct: 196 Y 196


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -2

Query: 352 STVFGTVLPKRPITMFPTASSPIFM*KVTL*VTFGPLGESSD*ATAKNKRIPRTVAKAA 176
           +TVFG   P      FP A +P+ + K+     F P GES   A A  + IP  ++ A+
Sbjct: 92  TTVFGQKYP------FPIALAPVGVQKI-----FNPEGESGSCAAATREHIPYIISTAS 139


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 311 NVPYCFITNFHVKSYLMSNFRSFRRIFR 228
           ++  CF+++  + S L S FRS RRI +
Sbjct: 319 SIKNCFLSSESLDSELQSQFRSIRRILQ 346


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 377 FLCQLIEVVYSLRNSLAEKTNNNV 306
           F+ + + + Y+L NS+ +K NNN+
Sbjct: 132 FMSENVNLQYALLNSIIDKMNNNI 155


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 278  VKSYLMSNFRSFRRIFR 228
            +KS+L +NFR FRR  R
Sbjct: 1045 IKSFLANNFRDFRRQIR 1061


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 350  YSLRNSLAEKTNNNVPYCFITNFHVKSYL 264
            + LRN +   TNN+    +I N + K+Y+
Sbjct: 1054 FLLRNDIVPNTNNSAWSEYIRNLYPKAYI 1082


>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
           3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 AFATVLGILLFFAVAQSEDSPK 245
           AF + LGI L + VA + D P+
Sbjct: 44  AFGSYLGITLLYNVATTNDKPE 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,068
Number of Sequences: 5004
Number of extensions: 28831
Number of successful extensions: 69
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)