Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M13
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 62 2e-10
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 57 5e-09
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 56 1e-08
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 54 3e-08
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 50 7e-07
09_06_0359 + 22508900-22509439 40 0.001
02_01_0160 + 1116160-1116678 39 0.001
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 37 0.007
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 36 0.010
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 34 0.039
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 30 0.84
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 29 1.1
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 62.1 bits (144), Expect = 2e-10
Identities = 29/53 (54%), Positives = 34/53 (64%)
Frame = +3
Query: 252 KVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEGYKGSKF 410
KV K F +++G E G IVIGLFG+ VPKTVDNF L +G GYKG F
Sbjct: 63 KVNSKCFFDVEVGGEPAGRIVIGLFGEVVPKTVDNFRALCTGDKGYGYKGCSF 115
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 57.2 bits (132), Expect = 5e-09
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 216 AVAQSEDSPKG-PKVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEG 392
A+AQ++ S +VTHKV F ++I + G +V+GLFGKTVPKT +NF L +G G
Sbjct: 35 ALAQAKKSKADLTEVTHKVYFDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTG 94
Query: 393 YKG 401
G
Sbjct: 95 KSG 97
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 55.6 bits (128), Expect = 1e-08
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +3
Query: 216 AVAQSEDSPKGPKVTHKVTFHMKIGDEA---VGNIVIGLFGKTVPKTVDNFYQLAQKPEG 386
A A ++ K+T+KV F + IG+ VG +VIGL+G VP+T +NF L +G
Sbjct: 68 ATADPKEVDLQSKITNKVYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCTGEKG 127
Query: 387 EGYKGSKF 410
GYKGS F
Sbjct: 128 FGYKGSSF 135
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 54.4 bits (125), Expect = 3e-08
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +3
Query: 180 AFATVLGILLFFAVAQSEDS---PKGPKVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTV 350
AF + L FA +S + P VT++V ++I + +G IVIGL+G VPKTV
Sbjct: 8 AFLACAALYLAFAAYSRRESLGEVRLPAVTNRVYLDVEIDGQHIGRIVIGLYGDVVPKTV 67
Query: 351 DNFYQLAQKPEGEGYKG 401
NF L EG G+KG
Sbjct: 68 ANFRALCTGEEGIGHKG 84
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 50.0 bits (114), Expect = 7e-07
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 216 AVAQS-EDSPKGPKVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEG 392
++AQ+ E + KVT KV F + I + G IV+GLFG TVPKT +NF + +G G
Sbjct: 24 SLAQAVESEAELTKVTTKVFFDITINGKPAGRIVMGLFGNTVPKTAENFRAICTGEKGLG 83
Query: 393 YKG 401
G
Sbjct: 84 KSG 86
>09_06_0359 + 22508900-22509439
Length = 179
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +3
Query: 264 KVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEGYKG 401
KV F + IG G +V+ LF TVPKT +NF L +G G G
Sbjct: 7 KVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASG 52
>02_01_0160 + 1116160-1116678
Length = 172
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 264 KVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEGYKG 401
+V F M +G G IV+ L+ K VP+T +NF L +G G G
Sbjct: 5 RVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSG 50
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 36.7 bits (81), Expect = 0.007
Identities = 22/56 (39%), Positives = 24/56 (42%)
Frame = +3
Query: 240 PKGPKVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEGYKGSK 407
PK K H V F + IG A I LF VPKT +NF L G G K
Sbjct: 2 PKAKKNPH-VFFDIAIGGRAAERITFELFADVVPKTTENFRALCTGERGLGVSTQK 56
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 36.3 bits (80), Expect = 0.010
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 240 PKGPKVTHKVTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLA---QKPEG--EGYKGS 404
P PK V F + IG G I + LF VPKT +NF Q + G +GYKG
Sbjct: 31 PPNPK-NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGC 89
Query: 405 KF 410
+F
Sbjct: 90 QF 91
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 34.3 bits (75), Expect = 0.039
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 279 MKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEG 392
+ IG E G IVI L+ VP+T +NF L +G G
Sbjct: 32 VSIGGEIEGRIVIELYASVVPRTAENFRALCTGEKGVG 69
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 29.9 bits (64), Expect = 0.84
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 267 VTFHMKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEGEGYKGSK 407
V + IGDE +V LF P+T +NF L G G K
Sbjct: 9 VFMDVSIGDEPDERMVFELFADVAPRTAENFRALCTGEMGIGQTSKK 55
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 279 MKIGDEAVGNIVIGLFGKTVPKTVDNFYQLAQKPEG 386
+ IG + G IV+ L+ P+T +NF L +G
Sbjct: 39 VSIGGDMEGRIVVELYASVAPRTAENFRALCTGEKG 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,847,707
Number of Sequences: 37544
Number of extensions: 166871
Number of successful extensions: 396
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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