Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M13
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.15 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   4.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 170 YQKFGFCLCNCCDFN 126
           Y+   F LC+CCDF+
Sbjct: 739 YEAHCFALCHCCDFD 753


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 356 VVYSLRNSLAEKTNNNV--PYCFITNFHVK 273
           +VY  RNS + +  NN+  PY     F++K
Sbjct: 209 LVYDFRNSRSWRITNNLFYPYPPYGTFNIK 238


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 330 KTVPKTVDNFYQLAQKPEGE 389
           K + KT++  Y LA  P+G+
Sbjct: 468 KELSKTINFTYSLALSPDGQ 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,979
Number of Sequences: 438
Number of extensions: 1978
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)