Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M12
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    24   4.7  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    24   6.3  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    23   8.3  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    23   8.3  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 259 VRGKLENYWTDQHETTTIRRGINRRW 182
           +RGKL  Y   +    TI R INR W
Sbjct: 856 LRGKLNLYNQKEKSIKTIGRYINRFW 881


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 106 YSHKTKGWHLTFQRSIFRTKVFFWIP 29
           Y H+   WH + + ++   K F  IP
Sbjct: 328 YRHQPPAWHNSIRHNLSLNKAFIRIP 353


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 175 AIYFSNPMSPLQCFLNLFVY 116
           A Y  N M  L+C  N F+Y
Sbjct: 155 ASYSRNHMEALECVYNCFIY 174


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 262 FVRGKLENYWTDQHE 218
           F  G L+NYW+  HE
Sbjct: 204 FAVGLLKNYWSQLHE 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,244,942
Number of Sequences: 5004
Number of extensions: 23338
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)