Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M12
(314 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0512 + 16675940-16677193,16677325-16677853,16678920-166789... 30 0.44
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 29 0.58
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 27 3.1
08_02_1500 + 27562593-27562811,27563028-27563080,27563941-275640... 26 7.1
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172 26 7.1
02_02_0514 - 11103524-11103546,11104120-11104199,11105061-111051... 26 7.1
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 25 9.4
07_03_0124 - 13723597-13724657,13726179-13726413 25 9.4
05_05_0274 - 23755384-23755655,23755780-23756139,23756316-237564... 25 9.4
02_05_1243 - 35209417-35209938,35210588-35210710,35210875-352111... 25 9.4
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 25 9.4
01_01_0376 + 2926426-2927040,2927150-2927239,2927674-2927892 25 9.4
>04_03_0512 +
16675940-16677193,16677325-16677853,16678920-16678999,
16679450-16679533
Length = 648
Score = 29.9 bits (64), Expect = 0.44
Identities = 25/79 (31%), Positives = 35/79 (44%)
Frame = +2
Query: 35 PKKYLCTKNTALKG*MPAFCFMGVNKLINKQIEKTLQRAHRI*KIYSL*PSTINPASNGC 214
PK + + +T L G CF +N L+N + K + HR I IN A C
Sbjct: 200 PKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNI------LIN-AYARC 252
Query: 215 GFMLIGPVVFEFTSDKENK 271
G M ++FE D +NK
Sbjct: 253 GMMDKAMLIFE---DMQNK 268
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 163 KNI*PITIYD*SRVEWLWFHADRSSSFRVYLGQR 264
+ + P +YD V WL +H D SF ++L QR
Sbjct: 679 RGVSPRRVYDGRSVTWLAYHGDYDLSFLLHLLQR 712
>01_06_0717 -
31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 205 EWLWFHADRSSSFRVYLGQRK 267
E +WFH D+ SS VYL +K
Sbjct: 762 EDVWFHVDKVSSAHVYLRLKK 782
>08_02_1500 +
27562593-27562811,27563028-27563080,27563941-27564020,
27564660-27564742
Length = 144
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -3
Query: 228 ISMKPQPFDAGLIVDGYRLYIFQ 160
+S P P +G++VDG +++F+
Sbjct: 67 LSFPPSPEKSGIVVDGSFIFVFE 89
>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
Length = 618
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 172 IYFSNPMSPLQCF 134
IYF + +SPLQCF
Sbjct: 588 IYFDSSLSPLQCF 600
>02_02_0514 -
11103524-11103546,11104120-11104199,11105061-11105113,
11105330-11105548
Length = 124
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -3
Query: 228 ISMKPQPFDAGLIVDGYRLYIFQ 160
+S P P +G++VDG +++F+
Sbjct: 67 LSFPPSPEKSGIVVDGSFIFVFE 89
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 191 INPASNGCGFMLIGPVVFEFTSDK 262
INPA+ G G + +GP+ TS +
Sbjct: 389 INPATVGTGSVQVGPIFSSLTSHR 412
>07_03_0124 - 13723597-13724657,13726179-13726413
Length = 431
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 176 GYIFFKSYEPFAMFSQFVCLLIYLLP*NKRLAFNLSTQ 63
GY+ ++ EP MFS F LL +LA +LST+
Sbjct: 156 GYVLLRTQEPKTMFSAFSILL------GLQLALSLSTK 187
>05_05_0274 -
23755384-23755655,23755780-23756139,23756316-23756474,
23756757-23757235,23757344-23757475,23757723-23757797,
23757882-23757950,23758025-23758096,23758196-23758267,
23758348-23758419,23758526-23758687,23758786-23758857,
23758955-23759029,23759615-23759686,23759781-23759901,
23760051-23760138
Length = 783
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 191 INPASNGCGFMLIGPVVF 244
+NPAS GC F G +VF
Sbjct: 407 VNPASCGCAFSYNGKMVF 424
>02_05_1243 -
35209417-35209938,35210588-35210710,35210875-35211135,
35211400-35211846
Length = 450
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 256 RGKLENYWTDQHETTTIRRGINRRWL*AIYFSNPMSPLQCF 134
RG ++N T + +NR+ L A YFS+ + LQ F
Sbjct: 100 RGVIKNSDEPTERTEIAVKQLNRKGLQASYFSSELYRLQAF 140
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 270 LFSLSEVNSKTTGPISMKPQPFDAGLIVDGYRLYIFQIL 154
+FSL V+ + G +S Q + L G L +FQIL
Sbjct: 363 VFSLWAVSDRKYGGLSFSSQDVGSVLAFSGLFLLVFQIL 401
>01_01_0376 + 2926426-2927040,2927150-2927239,2927674-2927892
Length = 307
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 5 EGKMTEDRWNPKKYLCTKNTALKG*MPAFCFMGVNKLI 118
EGK+ +N ++ C + +KG + C+ ++K I
Sbjct: 111 EGKLNSTSYNATRFACGYFSVVKGSICPLCYTPMHKAI 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,279,370
Number of Sequences: 37544
Number of extensions: 123882
Number of successful extensions: 191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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