Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M12
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    27   2.8  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       27   2.8  
U39470-1|AAC71119.2|  189|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U64846-4|AAG24111.1|  327|Caenorhabditis elegans Serpentine rece...    27   3.8  
AC024202-1|AAF36029.1|  285|Caenorhabditis elegans Hypothetical ...    27   3.8  
U41534-14|AAV34796.1|  226|Caenorhabditis elegans Hypothetical p...    26   5.0  
AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical ...    26   5.0  
AL034488-2|CAA22448.1|  210|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z46937-7|CAH10806.1|  109|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 264  SLSEVNSKTTGPISMKPQPFDAGLIVDGYR 175
            S S + S +T P+ M+  P     ++DGYR
Sbjct: 1234 SSSAIGSASTPPLPMQAPPSGPPTVIDGYR 1263


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 264  SLSEVNSKTTGPISMKPQPFDAGLIVDGYR 175
            S S + S +T P+ M+  P     ++DGYR
Sbjct: 1234 SSSAIGSASTPPLPMQAPPSGPPTVIDGYR 1263


>U39470-1|AAC71119.2|  189|Caenorhabditis elegans Hypothetical
           protein T08H4.2 protein.
          Length = 189

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -2

Query: 163 SNPMSPLQCFLNLFVY*FIYSHKTKGWHLTFQRSIFRTKVFFW 35
           S+  SP    L L       +HK K    T Q  +F T VFFW
Sbjct: 136 SSRYSPSSFILKLLHKIAQITHKKKRMANTRQTGVFDTSVFFW 178


>U64846-4|AAG24111.1|  327|Caenorhabditis elegans Serpentine
           receptor, class t protein38 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 83  PAFCFMGVNKLINKQIEKTLQ 145
           PAF ++G+N+LI K+  K L+
Sbjct: 287 PAFIYIGLNELIRKRFSKFLK 307


>AC024202-1|AAF36029.1|  285|Caenorhabditis elegans Hypothetical
           protein Y71H2B.8 protein.
          Length = 285

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 28  VESKKIPLYEKYCVERLNASLLFYGSK*INK 120
           +E   IP+ E +C +  + SL+F+  K  NK
Sbjct: 100 LEKSLIPVAESFCKKMASVSLIFFSRKIENK 130


>U41534-14|AAV34796.1|  226|Caenorhabditis elegans Hypothetical
           protein C16A3.10c protein.
          Length = 226

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 17  TEDRWNPKKYLCTKNTALKG*MPAFC 94
           T  R  P +Y CT+ +A    +P+FC
Sbjct: 198 TLPRQRPARYCCTRKSAFWRILPSFC 223


>AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical
           protein T06A1.5 protein.
          Length = 476

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 28  VESKKIPLYEKYCVERLNASLL-FYGSK*INKQTN*ENIAK 147
           VES+  P +  YC  R NA++L    SK  N+  + EN AK
Sbjct: 161 VESRVYPFFVVYCSRRSNATMLGITNSK--NEPISTENSAK 199


>AL034488-2|CAA22448.1|  210|Caenorhabditis elegans Hypothetical
           protein Y54G11A.2 protein.
          Length = 210

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 205 EWLWFHADRSSSFRVYL 255
           E +WFH D+ SS  VYL
Sbjct: 35  EDVWFHVDKLSSAHVYL 51


>Z46937-7|CAH10806.1|  109|Caenorhabditis elegans Hypothetical
           protein F43C1.7 protein.
          Length = 109

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 211 LWFHADRSSSFRVYL 255
           +WFH D+ SS  VYL
Sbjct: 37  VWFHVDKVSSAHVYL 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,722,697
Number of Sequences: 27780
Number of extensions: 125241
Number of successful extensions: 318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)