Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M11
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 0.93
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 27 0.93
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 26 2.1
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 26 2.1
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 2.8
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 25 4.9
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 25 4.9
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 25 4.9
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 24 6.5
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 24 6.5
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 6.5
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 24 6.5
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 24 8.6
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 24 8.6
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 24 8.6
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 0.93
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 215 TAGATTHGRRPVTRNSVSPTMQSSI 289
T HGR P+ N+ SPT ++I
Sbjct: 514 TTSGREHGRTPIRSNTFSPTFDTTI 538
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 27.1 bits (57), Expect = 0.93
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 205 QIPNGWGYNPWSQTGHKKLRQPDNAEFD 288
QIP W Y W+QT K+ +P+ D
Sbjct: 474 QIPCDWVYIQWAQTYIKQSSEPEEVVLD 501
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 2.1
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 77 YLTYGLLGAYAISKVANHVEISNQRISLVGSGPPIAKRFHLQTRFPTAGATTHGRR 244
YLT L A ++A + I ++ +S S PI+ ++ TR A T RR
Sbjct: 134 YLTPNALQRQAKERLAQTLGIRDEEVSYEASRMPISHKWTNATRHRQALLRTQARR 189
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 2.1
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 80 LTYG-LLGAYAISKVANHVEISNQRISLVGSGPPIA 184
+T+G L+ AISKV HVE + Q+ +V +G +A
Sbjct: 340 VTHGPLISEKAISKVKQHVEDAVQKGGVVVTGGKVA 375
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 150 EYPWLVLVRQSRKDFTYKP 206
E PW +L R+S D Y P
Sbjct: 30 ELPWRILARRSGADLCYSP 48
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 300 CLVDIELCIVGLTEFLVTGLRPWVVAPAVGNL 205
C + + L G F+ ++ W +APAVG+L
Sbjct: 273 CTLHVNLGQAGYV-FIEANIKKWRLAPAVGSL 303
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 76 VPYIWTSGRLCDFKGCESRRDLEPKNILGWFWSANREKISPTNQIP 213
V Y + G+ D +G ++E +L W N + ++P N P
Sbjct: 70 VKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRP 115
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +1
Query: 214 NGW---GYNPWSQTGHKKLRQPDNAEFDINQTSESCL 315
+GW G+N WS+ HKK I + S+ +
Sbjct: 25 SGWIMSGHNKWSKIKHKKSANDQARSLQIGKLSQGII 61
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 179 IAKRFHLQTRFPTAGATTHGRRPVTRNSVSPTMQ 280
+ +R HL TR T G G P + + T+Q
Sbjct: 463 LVERLHLDTRVTTLGHVQRGGIPCAYDRMLATLQ 496
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 194 HLQTRFPTAGATTHGRRPVTRNSVSPTMQS 283
H+Q+ P + T+ G RP + S++ T S
Sbjct: 161 HIQSLSPESKQTSDGHRPPSPTSITTTSTS 190
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 24.2 bits (50), Expect = 6.5
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 172 SANREKISPTNQIPN-GWGYNPWSQTGHKKLRQPDNAEFDINQTSESCLSI 321
S RE + +P+ GW S + KL + D+ F + ++ LSI
Sbjct: 7 SIRRESLRKLGCLPDHGWNLFVQSSNRYSKLLEADSKLFKAQRIEDTVLSI 57
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 24.2 bits (50), Expect = 6.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 127 SRRDLEPKNILGWFWSANREKISPTNQIPNGWGYNPWSQTGHKKLRQPDNAEFDI 291
SR L + G + A+ + TNQI NG+G + K+R P F++
Sbjct: 155 SRNFLRGRRDAGGIFGASIPQSLVTNQIINGFGAASLAFAKLGKVRSPLEGRFNL 209
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 245 PVTRNSVSPTMQSSISTKHLS 307
P+ SVSP ++SSI+ + +S
Sbjct: 9 PIATKSVSPFLRSSITCRRIS 29
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 96 RSPYVRYVILLDEFEDQVIFLLSLNGDEV 10
R+ +Y L+EFED+++ L L D V
Sbjct: 172 RNARAKYEESLEEFEDRMVQLKELEPDRV 200
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 28 TQEENNLIFKLIQQNDVPYIWTSGRLCDFKGCESRRDLE 144
T+E+ N +N++P+++ S R+ + E DLE
Sbjct: 215 TEEQRNYWSSYFNENNIPFLFFSARMA-AEANERGEDLE 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.440
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,170
Number of Sequences: 5004
Number of extensions: 35386
Number of successful extensions: 117
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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