Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M11
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461     29   0.86 
12_02_0025 + 12408933-12409464,12409590-12409686,12410121-124101...    28   2.6  
06_03_1065 - 27316270-27317032,27317062-27317189                       27   3.5  
07_01_0435 - 3311257-3311280,3311281-3311516,3313288-3313465           27   6.1  
04_01_0445 + 5812277-5813893                                           27   6.1  
01_06_1371 - 36723967-36724290                                         27   6.1  
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571...    26   8.1  

>08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461
          Length = 874

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 265 DGVSCDRSATMGCSPSRWESGL*VKSFRDWRTRTN-QGYSLVRDLYVI 125
           +GV+C+  + +GC PS  +  L V  +RD    +   G+S +RD   I
Sbjct: 735 EGVNCEDLSIIGCLPSLLQLSLRVPGYRDSLIISGCYGFSCLRDFCFI 782


>12_02_0025 +
           12408933-12409464,12409590-12409686,12410121-12410127,
           12412339-12412465,12412907-12413136
          Length = 330

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 19  SIETQEENNLIFKLIQQNDVPYIWTSGRLCDFKGCESRRDLEP 147
           +I+ +EEN++  K  ++++ P I+         G E   DLEP
Sbjct: 216 NIQQKEENDVTEKKEEKHEAPAIYEDSFQGKLNGAEINEDLEP 258


>06_03_1065 - 27316270-27317032,27317062-27317189
          Length = 296

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +2

Query: 86  YGLLGAYAISKVANHVEISNQRISLVGSGPPIAKRFHLQTRFP---TAGATTHGRR 244
           + + G  A   +A H  +S++R+++ G    +A    LQ R P    AGA    RR
Sbjct: 17  FNVNGYSATKAMAKHEHVSSKRLTVAGPRCALALLGRLQARLPRHRRAGAARRRRR 72


>07_01_0435 - 3311257-3311280,3311281-3311516,3313288-3313465
          Length = 145

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 294 VDIELCIVGLTEFLVTGLRPWVVAPAVGNLVC 199
           V +   I    + L+T +RPWV  P    LVC
Sbjct: 102 VQLRQAIAEAEQSLLTSVRPWVKPPMHVRLVC 133


>04_01_0445 + 5812277-5813893
          Length = 538

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -1

Query: 176 ADQNQPRIFFGSRSLRDSQPLKSHRRPEVHM*GTSFCWMSLKIRLFSS 33
           AD+   R  FG   L   Q L+ H R   H+ GT+ CW  L I  +SS
Sbjct: 271 ADEVARREQFG---LFSRQFLRRHGR---HLLGTTVCWFVLDIAFYSS 312


>01_06_1371 - 36723967-36724290
          Length = 107

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 220 SRWESGL*VKSFRDWRTRTNQGYSLVRD 137
           S WESG   + +  WR R  +G++++ D
Sbjct: 80  SPWESGRRKEPWSPWRLRAGRGHAVLMD 107


>02_01_0767 -
           5709733-5709789,5709845-5709871,5710374-5710449,
           5710542-5710661,5711321-5711421,5711618-5711743,
           5713504-5713596,5713694-5713816,5713889-5714032,
           5714539-5714672,5714893-5715002,5715315-5715430,
           5716438-5716572,5716650-5716820,5717545-5717709,
           5718165-5718242,5718313-5718445,5718551-5718741,
           5718842-5718914,5719001-5719056,5719142-5719300,
           5719383-5719496,5719562-5719654,5720544-5720726,
           5720801-5720878,5720966-5721052,5721135-5721216,
           5721288-5721400,5721486-5721636,5721759-5721877,
           5721966-5722163,5722377-5722442,5723837-5723957,
           5724224-5724343,5724412-5724542,5725210-5725341,
           5725418-5725519,5726231-5726437,5726510-5726626,
           5727468-5727623,5727721-5727810,5728624-5728848,
           5728969-5729091,5729202-5729284,5729459-5729618,
           5730264-5730374,5730652-5730751,5731375-5731454,
           5731752-5731847,5731961-5732110
          Length = 1991

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 50  SSNSSNRMTYLTYGLLGAYAISKVANHVEISNQRISLVGSGPPIAKRFH 196
           + NSS  +  +TYG+L +  ++ V++ +  S+++ SL  S     + FH
Sbjct: 252 NENSSVELQ-ITYGVLFSLVVTFVSDALSTSHEKPSLSSSDSSFRRDFH 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.134    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,182,646
Number of Sequences: 37544
Number of extensions: 234730
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)