Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M11
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical pr...    34   0.037
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    31   0.26 
Z68748-8|CAL36498.1|  583|Caenorhabditis elegans Hypothetical pr...    30   0.59 
Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical pr...    30   0.59 
Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical pr...    30   0.59 
Z81542-12|CAB04422.2|  363|Caenorhabditis elegans Hypothetical p...    29   1.0  
Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AL023821-3|CAA19439.2|  363|Caenorhabditis elegans Hypothetical ...    29   1.0  
Z81542-1|CAB04414.1|  379|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AL023821-2|CAA19437.2|  355|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical ...    28   2.4  
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    28   2.4  
Z50756-3|CAI79214.1|  305|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z48638-7|CAA88571.2|  340|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium chann...    26   9.7  

>Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical
           protein F49A5.9 protein.
          Length = 365

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  LVSIETQEENNLIFKLIQQNDVPYIWTSGRLC 108
           L SI  ++ENN IF  +  + V Y WT G +C
Sbjct: 140 LFSIRNEQENNAIFDFVSNSSVDYFWT-GLIC 170


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 13  LVSIETQEENNLIFKLIQQNDVPYIWTSGRLCD 111
           L SI  ++ENN     +  + V YIWT G +C+
Sbjct: 184 LFSIRNEQENNATLDFVSNSGVAYIWT-GLICN 215


>Z68748-8|CAL36498.1|  583|Caenorhabditis elegans Hypothetical
           protein F13H10.3c protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 200 VGEIFSRLADQNQPRIFFGSRSLRDSQPLKSHRRPEVH 87
           +G I S+ A   QP +F G   LRD   L  H   ++H
Sbjct: 45  IGSIPSQSAATRQPYLFTGGLGLRDESLLSLHSEDDLH 82


>Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical
           protein F13H10.3b protein.
          Length = 617

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 200 VGEIFSRLADQNQPRIFFGSRSLRDSQPLKSHRRPEVH 87
           +G I S+ A   QP +F G   LRD   L  H   ++H
Sbjct: 77  IGSIPSQSAATRQPYLFTGGLGLRDESLLSLHSEDDLH 114


>Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical
           protein F13H10.3a protein.
          Length = 615

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 200 VGEIFSRLADQNQPRIFFGSRSLRDSQPLKSHRRPEVH 87
           +G I S+ A   QP +F G   LRD   L  H   ++H
Sbjct: 77  IGSIPSQSAATRQPYLFTGGLGLRDESLLSLHSEDDLH 114


>Z81542-12|CAB04422.2|  363|Caenorhabditis elegans Hypothetical
           protein Y102A5B.1 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 13  LVSIETQEENNLIFKLIQQNDVPYIWTSGRLCDFKG 120
           L SI + +EN  +   ++  +V  +WT G +CD  G
Sbjct: 145 LFSIRSDQENQAVLDFVKNENVDNLWT-GLICDDHG 179


>Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical
           protein F16H6.1 protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 7   GDLVSIETQEENNLIFKLIQQNDVPYI 87
           G+LVSI + EENN +  L   N   YI
Sbjct: 198 GNLVSIHSDEENNFVQSLFTTNSPTYI 224


>AL023821-3|CAA19439.2|  363|Caenorhabditis elegans Hypothetical
           protein Y102A5B.1 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 13  LVSIETQEENNLIFKLIQQNDVPYIWTSGRLCDFKG 120
           L SI + +EN  +   ++  +V  +WT G +CD  G
Sbjct: 145 LFSIRSDQENQAVLDFVKNENVDNLWT-GLICDDHG 179


>Z81542-1|CAB04414.1|  379|Caenorhabditis elegans Hypothetical
           protein F49A5.2 protein.
          Length = 379

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 13  LVSIETQEENNLIFKLIQQNDVPYIWT 93
           LVSI+ ++ENN I   +  + V  +WT
Sbjct: 146 LVSIKNEQENNAILNFVPNSAVENLWT 172


>AL023821-2|CAA19437.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5B.3 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  LVSIETQEENNLIFKLIQQNDVPYIWTSGRLC 108
           L SI  ++EN+ I     +N++  IWT G LC
Sbjct: 133 LFSIRNEQENSAILDFASKNNIGNIWT-GLLC 163


>AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical
           protein C16A11.5 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 131 VEISNQRISLVGSGPPIAKRFHLQTRFPTA 220
           ++I++ R+ L GSG  +A+   +   FPT+
Sbjct: 64  IDITHPRLRLYGSGKELAENVRIHRNFPTS 93


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 127 SRRDLEPKNILGWFWSANREKISPTNQIPNGWG 225
           S   L   +ILG   +A  EK+   +QIPN WG
Sbjct: 141 SEEKLTFSDILGKPTAAGAEKMIELSQIPNAWG 173


>Z50756-3|CAI79214.1|  305|Caenorhabditis elegans Hypothetical
           protein T08D10.4 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 241 QTGHKKLRQPDNAEFDINQTSESCLSILNNVYND 342
           Q  +K +R+ DN+  +  QTS S   +L+N++ D
Sbjct: 119 QMKNKTIRENDNSHNNQTQTSCSSADLLDNIHQD 152


>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 1   ARGDLVSIETQEENNLIFKLIQQNDVPYI 87
           A G+LVSI + EENN +  L   N   YI
Sbjct: 189 ACGNLVSIHSIEENNYVQSLFTTNAPTYI 217


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 13  LVSIETQEENNLIFKLIQQNDVPYIWTSGRLCDFKG 120
           L SI   +EN  + + ++   V  +W +G +CD  G
Sbjct: 88  LFSIRNDQENQALMEFVKDQKVENLW-AGLICDRHG 122


>Z48638-7|CAA88571.2|  340|Caenorhabditis elegans Hypothetical
           protein ZK892.4 protein.
          Length = 340

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 70  NDVPYIWTSGRLCDFKGCESRRDLEPKNILGWF 168
           +D+ Y+  SG L  F G  + R   P N+L  F
Sbjct: 123 HDINYVALSGMLPTFSGVNATRPWPPANMLADF 155


>AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium channel,
           beta subunit protein1 protein.
          Length = 526

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 28  TQEENNLIFKLIQQNDVP 81
           T+E+  LIFK +QQ +VP
Sbjct: 174 TKEKKKLIFKKVQQENVP 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.134    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,374,617
Number of Sequences: 27780
Number of extensions: 198472
Number of successful extensions: 576
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)