Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M10
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495...    30   0.84 
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616     29   1.9  
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836...    28   2.6  
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499...    27   4.5  
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856...    27   4.5  
09_06_0041 - 20440266-20441381                                         27   5.9  
02_04_0346 - 22183145-22183264,22183877-22183966,22184140-221842...    27   7.8  

>09_04_0361 -
           16948740-16948860,16948951-16949018,16949424-16949510,
           16949626-16949694,16949786-16949854,16949944-16950765
          Length = 411

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 121 CVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHREGG 8
           C +  ++ GCR  Q  G + FC+L  ++  + EH   G
Sbjct: 25  CSSASTAAGCRFFQDGGWRPFCMLTSSSRGHAEHHRNG 62


>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
          Length = 695

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 97  QDCYLQQHSSCATTRSSAYTHTDXXXXXXXXXXXAHLPDHL 219
           ++C+ ++ S  A  + S + HTD           A++PDHL
Sbjct: 365 KECFTEEDSENARQKQS-FNHTDMVFSGLGNSNRAYMPDHL 404


>01_01_1060 -
           8363272-8365912,8366375-8366443,8366479-8366843,
           8367403-8367550,8367630-8367873,8368105-8368407,
           8368639-8368851,8368927-8369002,8369533-8369561,
           8369610-8369984,8371784-8371927,8374053-8374086
          Length = 1546

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 291 PERVLERYAVPSSLVMPGTPPXNNSCSH 374
           P+      A PS LV P   P N  CSH
Sbjct: 37  PDAASNTSAAPSGLVQPPVSPHNACCSH 64


>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
            30550422-30550538,30550873-30551111,30552279-30552365,
            30552732-30552831,30553319-30553532,30553617-30553777
          Length = 1349

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 169  NNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFC 56
            ++LC C  C E  H  C  E ++      Q+C +  FC
Sbjct: 1003 SSLCTCSQCEEKYHPGCSPETTNTSNVSSQACDL--FC 1038


>03_05_0351 -
           23382786-23382821,23383373-23383634,23384369-23385675,
           23385776-23386290,23386379-23386741,23386916-23387284,
           23387365-23388057,23388152-23388238,23388354-23388612
          Length = 1296

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 34  QSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 138
           +S+H ++H      + D+PC+Q   L+    C+++
Sbjct: 229 RSAHLARHNELYATRRDKPCAQSIALECPEDCSSS 263


>09_06_0041 - 20440266-20441381
          Length = 371

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 339 PGTPPXNNSCSHMPS-WVSPCL 401
           PG PP NNS    PS W+ P L
Sbjct: 349 PGAPPLNNSSLIRPSVWIFPSL 370


>02_04_0346 -
           22183145-22183264,22183877-22183966,22184140-22184220,
           22184430-22184589,22184723-22184787,22185370-22185441,
           22186163-22186327
          Length = 250

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -2

Query: 175 NWNNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHRE 14
           N  + C C    +++H+ CV    +   +GD  C I H     G T   + H +
Sbjct: 43  NLESPCACSGSLKYAHRECVQRWCNE--KGDIICEICHVSYKPGYTAPPQVHHD 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,066,282
Number of Sequences: 37544
Number of extensions: 204390
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)