Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M10
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    79   2e-15
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    79   2e-15
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    79   2e-15
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    30   0.76 
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      30   0.76 
U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      27   4.1  
U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormo...    27   7.1  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    26   9.4  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 41/73 (56%), Positives = 44/73 (60%)
 Frame = +2

Query: 194 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXCGSLIIGYARNPSL*QQLFS 373
           A R   TT   KDIDSAAK+                     G+L+IGYARNPSL QQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 374 YAILGFALSEAMG 412
           YAILGFALSEAMG
Sbjct: 66  YAILGFALSEAMG 78


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 41/73 (56%), Positives = 44/73 (60%)
 Frame = +2

Query: 194 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXCGSLIIGYARNPSL*QQLFS 373
           A R   TT   KDIDSAAK+                     G+L+IGYARNPSL QQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 374 YAILGFALSEAMG 412
           YAILGFALSEAMG
Sbjct: 66  YAILGFALSEAMG 78


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 41/73 (56%), Positives = 44/73 (60%)
 Frame = +2

Query: 194 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXCGSLIIGYARNPSL*QQLFS 373
           A R   TT   KDIDSAAK+                     G+L+IGYARNPSL QQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 374 YAILGFALSEAMG 412
           YAILGFALSEAMG
Sbjct: 90  YAILGFALSEAMG 102


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
            protein.
          Length = 1173

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 154  CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 29
            C++C   +HK  VA+ S P CR   + G+    VL    TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 154  CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 29
            C++C   +HK  VA+ S P CR   + G+    VL    TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131


>U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical
           protein R57.2 protein.
          Length = 216

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -2

Query: 154 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHRE 14
           C H C +     V  +     R D  C I+H   +    + N+++R+
Sbjct: 113 CHHMCVYETDQSVTRNMLTNMRKDSQCRIKHLSSILYCASQNRDNRK 159


>Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical
           protein F13E6.3 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 160 CVCRHCCEWSHKSCV 116
           C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 223 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 74
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 223 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 74
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 223 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 74
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical
           protein F38E1.6 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 99  GLLSSATQLLCDHSQQCLHTHRLFQLHLLNY 191
           G+L S  +++ DH  QC H++  + L L N+
Sbjct: 85  GILKSVEEII-DHELQCAHSYSYYILVLANF 114


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 181 RCNWNNLCVCRHCCEWSHKSC 119
           RC  N  C   H C+ SHK C
Sbjct: 419 RCETNADCPSSHSCQGSHKVC 439


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = -2

Query: 304  NTRSGSSYSNCRCASTNEFGSRVNVFGDRG-GLEGAHS**LSRCNWNNLCVCRHCCEWSH 128
            + + G S   C+   TN+   +    G+RG G + +    L   N +N C  R C     
Sbjct: 1801 SAKCGESCPPCKAFCTNKCEHQSCGAGERGFGRDCSKLCALCVNNCSNKCAHRSCTLKCF 1860

Query: 127  KSCVAEDSSPGCRGDQSCGIQHFCV 53
            + C  +  +  C     CG  H C+
Sbjct: 1861 EECNVKPCTEPCTDKLKCG--HACL 1883


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 25  LCCQSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 138
           + C+ S  +   N VC     P +  C  Q  SSCA +
Sbjct: 1   MACKCSTSTNISNRVCSCSPLPSTSSCGCQASSSCANS 38


>AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 135 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 157 VCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQH 62
           +CR C  +  +  ++  S+  CR D+SC I +
Sbjct: 24  ICRACSAFFRRYVLSPKSAIKCRKDKSCRIHY 55


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -2

Query: 334 TNDEGTAYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRCNWNNLCV 155
           +N    +  S++ SGS+ +N      N + +     G  GG  G+        +   +  
Sbjct: 132 SNTNNLSSSSHSMSGSNNNNSNNNVVNNYLTVYGNNGSSGGGSGSGGGSGPGADSPRIHC 191

Query: 154 CRHCCEWSH 128
           CR CC +SH
Sbjct: 192 CRPCCPYSH 200


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +1

Query: 16  LGVLCCQSSHPSKHKNAV---CRKIDRPCSQDCYLQQHSS 126
           +G+  C+   P K K  V   C K D P    C + QHSS
Sbjct: 478 VGLPKCEIGEPLKTKIGVPVNCAKTDCPSGYRCSVVQHSS 517


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 348  PPXNNSCSHMPSWVSPCLRLWV 413
            P  NNS  H+P W  P    W+
Sbjct: 1712 PGKNNSSMHLPQWPKPKQAGWI 1733


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,070,482
Number of Sequences: 27780
Number of extensions: 167734
Number of successful extensions: 526
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)