Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M09
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    27   0.41 
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   0.95 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   1.7  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    24   5.0  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    23   6.7  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    23   6.7  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    23   6.7  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    23   6.7  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    23   8.8  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    23   8.8  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    23   8.8  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     23   8.8  

>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 27.5 bits (58), Expect = 0.41
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 59  MISAFECVVTSVERDLIWLEELGYLYEKFY 148
           M S F  V++S+E + + L++L YLY K Y
Sbjct: 48  MSSLFPSVISSMESNNLELKKLCYLYLKIY 77


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 229 LVHNWKYF*TNFCTSYVWQQMSFFFPKIKFLIQV 128
           L+ NW+      CT+    +M F  PK+ F I V
Sbjct: 149 LLPNWRDDPPENCTAVTHDKMKFLIPKLHFPIPV 182


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 71  FECVVTSVERDLIWLEELGYLYEKFYLWKKE*HLLPYI--GSTKISSEIF 214
           +  VVTS ERDLI   E   LY K  L  K  +++ Y    S+K++S+++
Sbjct: 168 YAVVVTSFERDLIPFHE---LYYKLALEGKCNYVIRYSPPSSSKLNSKLY 214


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 171 CCHT*EVQKLVQKYFQL*TKRLNIPNIISEVEQYLE 278
           C +   +  L+Q +FQ  T +++I +I S+ +Q ++
Sbjct: 403 CLYPLSLNHLIQSFFQSLTSQISIKDIDSKNKQVIK 438


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 257 RNNIRYI*AFSS*LEIFLN*FLYFLCMATDVILFSKDK-ISHTSI 126
           RN+I+ I  F +   IF    L+     +DV+LF +D  IS  S+
Sbjct: 127 RNSIKSILQFQNFSNIFAKKNLFPKVSKSDVLLFPRDAFISQASL 171


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 175 QQMSFFFPKIKFLIQVSKLLQPY 107
           Q++ FFFPK K +   S L+ P+
Sbjct: 38  QELDFFFPKSKHI--ASTLVDPF 58


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 286 YKPSKYCSTSEIILGIFKRLVHNWKYF*TNFCTSYVWQQMSFFFPKIKFLI 134
           Y   K+C      +G+FK  ++N   F  + CT+  W+  ++ F  + +LI
Sbjct: 135 YYNEKFCCWYSETMGMFKHDLYNDLTFQGSSCTA--WKPWTYKF-SLNYLI 182


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 85  HYTLES*NHSSVFIVCRNIAYNAK 14
           HY L   NHS+++ + R IAY+ K
Sbjct: 402 HYGLRP-NHSTLYELIRLIAYSGK 424


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 119 ELGYLYEKFYLWKKE*HLLPYIGSTKI 199
           E+  LY+++Y  K+E  + P    TK+
Sbjct: 42  EIALLYKQYYELKRESSITPKKAKTKV 68


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 68  AFECVVTSVERDLIWLEELGYLYEKFYLWKKE*HLLPYIGSTKISSEIFPIM 223
           AFEC+       LIW   +   ++K  LW +    + ++G+ KI++ +   M
Sbjct: 104 AFECIDLDDNCKLIWESTVLSDHQKQSLWTE---FIFFLGNFKITNSMSAAM 152


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 149 DKISHTSIQAPPAILNHAQQMSLHTRKLK 63
           D +   S+ A  +  +HA+Q S+H  K +
Sbjct: 404 DGVQSASLNASMSARSHARQRSIHVPKTR 432


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 225 TKRLNIPNIISEVEQYL 275
           TK  ++PN+++  E+YL
Sbjct: 305 TKHADLPNLVNNFEKYL 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,136,732
Number of Sequences: 5004
Number of extensions: 20916
Number of successful extensions: 45
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)