Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M09
         (287 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899     29   0.60 
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750...    29   0.80 
05_03_0198 + 9612767-9613243                                           27   2.4  
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    27   3.2  
11_01_0469 + 3638493-3641166,3641286-3641653                           26   5.6  
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527     26   5.6  
03_01_0114 + 912025-912308,912642-912805,912917-913080,913196-91...    25   9.8  

>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
          Length = 712

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +2

Query: 14  LSVIGDISTDDKDTRMISAFECVVTSVERDLIWLEELGYLYE 139
           L  +G I  +++D+R    +  + +  +  L+W+++LG  Y+
Sbjct: 178 LQQLGTIKDEEEDSRRCGRYHIIESCGKLFLLWIDDLGCFYD 219


>01_01_0956 +
           7505206-7505322,7505860-7506723,7506841-7507260,
           7508091-7508342,7508696-7508953,7509798-7509877,
           7509959-7510070,7510492-7510541,7511070-7511171,
           7511215-7511276,7511888-7511928
          Length = 785

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 85  HYTLES*NHSSVFIVCRNIAYNAKKT 8
           HY ++   H S FI+CR+   NA+K+
Sbjct: 753 HYFVKFETHISTFIICRSCTGNARKS 778


>05_03_0198 + 9612767-9613243
          Length = 158

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 198 IFVLPMYGNRCHSFFQR*NFSYKYPSSSSHIKSRSTD 88
           +  L  + N CH++F R  FS + P SS  + SR TD
Sbjct: 36  LLALLRHFNHCHTYFSRRQFSLQ-PRSSQSL-SRPTD 70


>02_05_0235 -
           27068516-27069032,27069697-27069788,27070056-27070289,
           27071569-27071676,27071796-27071855,27072368-27072443,
           27072550-27072710,27076919-27076981,27077061-27077148,
           27077568-27078308,27078406-27079033,27079314-27079368,
           27082073-27083527
          Length = 1425

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 41  DDKDTRMISAFECVVTSVE 97
           + KDT +IS F+CV++SV+
Sbjct: 504 ETKDTCVISKFQCVISSVK 522


>11_01_0469 + 3638493-3641166,3641286-3641653
          Length = 1013

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 117  RSLDTCMRNFIFGKKNDICC 176
            R LD C    I  +KN++CC
Sbjct: 954  RELDICQETSINVEKNEVCC 973


>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
          Length = 710

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 14  LSVIGDISTDDKDTRMISAFECVVTSVERDLIWLEELG 127
           L  +G I  ++K  R    +  V +  +  L+W+EELG
Sbjct: 178 LQRVGTIKDEEKYARGSGCYHVVESCGKLFLLWIEELG 215


>03_01_0114 +
           912025-912308,912642-912805,912917-913080,913196-913449,
           914060-914171
          Length = 325

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 225 FIIGNISELIFVLPMYGNRC 166
           F++ NI  ++FVL MY N C
Sbjct: 42  FLVANI--VVFVLTMYANNC 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,582,898
Number of Sequences: 37544
Number of extensions: 106214
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)