Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M09
         (287 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC125020-1|AAI25021.1|  853|Homo sapiens TRPS1 protein protein.        28   4.8  
AF264784-1|AAG21134.1| 1281|Homo sapiens zinc finger protein GC7...    28   4.8  
AF183810-1|AAF23614.1| 1281|Homo sapiens zinc finger transcripti...    28   4.8  

>BC125020-1|AAI25021.1|  853|Homo sapiens TRPS1 protein protein.
          Length = 853

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 158 FSKDKISHTSIQAPPAILNHAQQMSLHTR 72
           FS D++S  + Q+  A LNH ++ SLH +
Sbjct: 37  FSADQMSENTDQSDAAELNHKEEHSLHVQ 65


>AF264784-1|AAG21134.1| 1281|Homo sapiens zinc finger protein GC79
           protein.
          Length = 1281

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 158 FSKDKISHTSIQAPPAILNHAQQMSLHTR 72
           FS D++S  + Q+  A LNH ++ SLH +
Sbjct: 37  FSADQMSENTDQSDAAELNHKEEHSLHVQ 65


>AF183810-1|AAF23614.1| 1281|Homo sapiens zinc finger transcription
           factor TRPS1 protein.
          Length = 1281

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 158 FSKDKISHTSIQAPPAILNHAQQMSLHTR 72
           FS D++S  + Q+  A LNH ++ SLH +
Sbjct: 37  FSADQMSENTDQSDAAELNHKEEHSLHVQ 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,634,636
Number of Sequences: 237096
Number of extensions: 632110
Number of successful extensions: 1030
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 76,859,062
effective HSP length: 72
effective length of database: 59,788,150
effective search space used: 1375127450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)