Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M09
         (287 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81520-1|CAB04223.1|  399|Caenorhabditis elegans Hypothetical pr...    28   0.93 
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   1.6  
AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical...    26   5.0  
U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>Z81520-1|CAB04223.1|  399|Caenorhabditis elegans Hypothetical
           protein F31B9.1 protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -1

Query: 212 IFLN*FLYFLCMATDVILFSKDKISHTSIQAPP---AILNHAQQMSLHTRKLKSF*C 51
           + ++  LYFLC     +LF  +KI   S+Q P     +LN    MS  T  +    C
Sbjct: 277 LIISMLLYFLCYTPIQVLFMLEKILDHSVQLPQWLRLLLNVLSVMSSSTNPIVYIIC 333


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = -2

Query: 268 CSTSEIILGIFKRLVHNWKYF*TNFCTSYVWQQMSFFFPKIKFLIQVSKLL 116
           C       G+F  L+ N       FC ++VW    F  P IK    +  L+
Sbjct: 87  CCVVASYYGVFFNLLSNGLLSLNRFCATWVWYNTYFDKPLIKLYFLIISLV 137


>AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14b protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 184 YVWQQMSFFFPKIKFLIQVS 125
           ++W++  FF  KI+F IQ+S
Sbjct: 108 FLWEKHEFFEKKIQFSIQIS 127


>U41531-6|AAA83160.1|  144|Caenorhabditis elegans Hypothetical
           protein T07D1.3 protein.
          Length = 144

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +3

Query: 111 GWRSLDT---CMRNFIFGKKNDICC 176
           GW+   T   C ++  +GKK +ICC
Sbjct: 89  GWQQKKTGEYCRKSRDYGKKGEICC 113


>Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical
           protein T09E8.4 protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 58  SSVFIVCRNIAYNAKKTLV 2
           SSVF++C+ IA+N     V
Sbjct: 330 SSVFLICQTIAFNTATAFV 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,076,216
Number of Sequences: 27780
Number of extensions: 109269
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)