Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M09
         (287 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.75 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   1.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   3.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   3.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 191 YFLCMATDVILFSKDKISHTSIQAPP 114
           Y+LC A + I      +   S+QAPP
Sbjct: 752 YYLCEAVNGIGAGLSAVIFISVQAPP 777


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -2

Query: 283 KPSKYCSTSEIILGIFKRLVHNWKYF*TN----FCTSYVWQQMSFF 158
           K  K   T  I++G+F  ++    +F  N    FC+  +WQ+   F
Sbjct: 329 KEKKAAKTLGIVMGVF--IICWLPFFVVNLWSGFCSQCIWQEKIVF 372


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +2

Query: 5   EGFLSVIGDISTDDKDTRMISAFECVVTSVERDLIWL 115
           +G   +   I   DKD  +I  ++ V   ++R  +W+
Sbjct: 452 KGVRFIAQHIKNADKDNEVIEDWKFVAMVLDRLFLWV 488


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 229 LVHNWKYF*TNF 194
           ++H WKYF  +F
Sbjct: 34  VIHEWKYFDYDF 45


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 138 SYKYPSSSSHI 106
           S +YPS+SSHI
Sbjct: 439 SPQYPSTSSHI 449


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 169 MSFFFPKIKFLIQVSKLLQP 110
           +S     + FL+ VSK+L P
Sbjct: 269 ISILLSLVVFLLLVSKILPP 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,557
Number of Sequences: 438
Number of extensions: 1497
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)