Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M07
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    40   5e-05
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    34   0.002
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   1.9  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    24   2.4  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    23   4.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    23   4.3  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    23   5.6  
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    23   7.5  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    23   7.5  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    23   7.5  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    23   7.5  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    22   9.9  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    22   9.9  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 39.9 bits (89), Expect = 5e-05
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = +1

Query: 163 SALYNVDGGHRAVIFDRFAGVKNLV 237
           ++L+NVDGGHRA+ + R  G+KNL+
Sbjct: 34  TSLFNVDGGHRAIKYSRIGGIKNLI 58


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 34.3 bits (75), Expect = 0.002
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +1

Query: 163 SALYNVDGGHRAVIFDRFAGVKNLV 237
           S++Y+V GG RAV+FDR +GV+  V
Sbjct: 24  SSIYDVPGGKRAVLFDRLSGVQKQV 48


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 29  KAVFHV*NNYYVARIVKLRKRW 94
           +AV H+   YY ++I K + RW
Sbjct: 217 RAVEHIAKKYYSSKITKEKVRW 238


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 152 PPTRAIPSPTWP 117
           PP RA+P+PT P
Sbjct: 255 PPERALPAPTMP 266


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 152 PPTRAIPSPT-WPMRLNNCAAIFF 84
           P ++  P P+ W MRL N A ++F
Sbjct: 340 PVSQLGPLPSGWEMRLTNTARVYF 363


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 221  PANLSKITAL*PPSTL*SAELTTPPTRAIPSPT 123
            PAN  ++  L PP+    A    PPT ++PSP+
Sbjct: 1015 PAN--RVVPL-PPTASQRASAYEPPTVSVPSPS 1044


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 242 PETKFFTPANLSKITAL*PPS 180
           P +KF +  NLS I +L PPS
Sbjct: 578 PFSKFSSSENLSLIPSLLPPS 598


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 226 LHQQIYQRLLLCD 188
           LH+ +YQ +L CD
Sbjct: 324 LHELVYQSILACD 336


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 35   VFHV*NNYYVARIVKLRKRW 94
            +F V   +YV R++KLR  W
Sbjct: 1502 IFAVLLLFYVFRVMKLRSTW 1521


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -1

Query: 134 PSPT-WPMRLNNCAAIFF 84
           P P+ W MRL N A ++F
Sbjct: 365 PLPSGWEMRLTNSARVYF 382


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/57 (19%), Positives = 23/57 (40%)
 Frame = +2

Query: 26  IKAVFHV*NNYYVARIVKLRKRWQHSCSTALAKWDXXXXXXXXXXXXHSTMLMVVTE 196
           ++ V H+  + + A++  +R    HS   A+ +W             + +    VTE
Sbjct: 26  LRVVAHIDQDAFYAQVESVRLGLDHSVPLAVQQWQGLIAVNYAARAANISRHETVTE 82


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 49  LNVKYGFYYFPS 14
           +N+ Y FYY PS
Sbjct: 100 INMLYAFYYMPS 111


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 170 SAELTTPPTRAIPSPTWPMRL 108
           S E  + PTRA  SPT P+ L
Sbjct: 265 SEEKDSQPTRAPQSPTKPVLL 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 996,457
Number of Sequences: 5004
Number of extensions: 17634
Number of successful extensions: 44
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)