Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M07
(242 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0362 - 22366668-22367516 44 2e-05
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 40 4e-04
04_04_0143 - 23091613-23092467 39 5e-04
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 39 6e-04
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 28 0.91
06_01_0247 + 1863549-1863978,1865001-1865261,1865346-1866221,186... 27 1.6
12_02_0674 - 21745321-21746223,21746229-21747608 27 2.8
08_02_0227 - 14485676-14487316 27 2.8
12_01_0910 + 8858443-8859414 26 3.7
02_04_0003 + 18832467-18832543,18832627-18832849,18832985-188333... 26 3.7
10_08_0055 - 14505747-14506934 26 4.9
04_04_1125 + 31085106-31085714 26 4.9
12_02_0582 - 20789739-20790182,20794940-20796120,20796450-20796477 25 6.4
08_02_1021 + 23705474-23705764,23706706-23706729 25 6.4
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 25 6.4
06_03_0905 + 25843547-25844314 25 8.5
>02_04_0362 - 22366668-22367516
Length = 282
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/44 (45%), Positives = 24/44 (54%)
Frame = +1
Query: 94 AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGV 225
AA L ++ ++ALY VDGG RAVIFDRF GV
Sbjct: 8 AASLLTKLAQAAAGLGIAASAASTALYTVDGGQRAVIFDRFRGV 51
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 39.5 bits (88), Expect = 4e-04
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +1
Query: 163 SALYNVDGGHRAVIFDRFAGVKNLV 237
++LYNV+GGHRA++F+R G+K+ V
Sbjct: 29 NSLYNVEGGHRAIVFNRLEGIKDKV 53
>04_04_0143 - 23091613-23092467
Length = 284
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +1
Query: 94 AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGV 225
A I +++LY VDGG RAVIFDRF GV
Sbjct: 7 AVSFLTNIAKAAAGLGAAASLLSASLYTVDGGERAVIFDRFRGV 50
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 38.7 bits (86), Expect = 6e-04
Identities = 13/23 (56%), Positives = 21/23 (91%)
Frame = +1
Query: 163 SALYNVDGGHRAVIFDRFAGVKN 231
++LYNV+GGHRA++F+R G+K+
Sbjct: 35 NSLYNVEGGHRAIVFNRIQGIKD 57
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 28.3 bits (60), Expect = 0.91
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 239 ETKFFTPANLSKITAL*PPSTL*SAELTTPPTRAIPSPTWPMRL 108
E + A L ++ L P S L S+ PP PSPT P L
Sbjct: 96 EAELLALARLHPVSTLDPSSFLLSSPTAPPPRPQAPSPTAPPSL 139
>06_01_0247 +
1863549-1863978,1865001-1865261,1865346-1866221,
1866344-1866813
Length = 678
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 238 KPNSLHQQIYQRLLLCDHHQHCRVQN*QLHQL 143
KP+ +HQ I +L DHH R+ LH+L
Sbjct: 534 KPSVVHQNISAEKILLDHHLTPRLSVPGLHKL 565
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 242 PETKF-FTPANLSKITAL*PPSTL*SAELTTPPTRAIPSPTWPMRLNNC 99
P KF P LS T+ P+T ++EL+T T +PSPT + C
Sbjct: 450 PPVKFPLPPVPLSSSTSE-IPTTTGTSELSTASTGELPSPTVKIPTTAC 497
>08_02_0227 - 14485676-14487316
Length = 546
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -1
Query: 158 TTPP--TRAIPSPTWPMRLNNCAAIFFGVLRFLQRNNYFKREIRLLLLSKLS 9
++PP T A+P P + +RL++ FGVL + K EI L L ++++
Sbjct: 147 SSPPRYTYAMPGPEYNLRLHHLPCEDFGVLHLTGCS--LKEEIHLCLRNRIA 196
>12_01_0910 + 8858443-8859414
Length = 323
Score = 26.2 bits (55), Expect = 3.7
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Frame = -1
Query: 188 PPSTL*SAELTTPPTRAIPSPT---WPMRLNNCAAIFFGVL-----RFLQRNNYFKREIR 33
PPS ++ L PP R PSP WP L AA ++ FL ++ +
Sbjct: 6 PPSLPPASPLPLPPWRPDPSPAVLPWPDLLAGAAAATRRLIAAHSRHFLALSSLLLLPLS 65
Query: 32 LLLLSKLSP 6
LLLLS +P
Sbjct: 66 LLLLSLPAP 74
>02_04_0003 +
18832467-18832543,18832627-18832849,18832985-18833375,
18833766-18834223,18834320-18834607,18834679-18835398
Length = 718
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 11 RAWKVIKAVFHV*NNYYVARIVKLRKRW 94
+AWK + +++ ++ Y+ R+ +RKRW
Sbjct: 293 KAWKDLMEQYNLESSVYLRRMWGIRKRW 320
>10_08_0055 - 14505747-14506934
Length = 395
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 143 RAIPSPTWPMRLNNCAAIFFGVLRFLQRN 57
R++PS T L++ AA FG RF++R+
Sbjct: 109 RSVPSHTMATDLHDFAATGFGFGRFIERS 137
>04_04_1125 + 31085106-31085714
Length = 202
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 224 TPANLSKITAL*PPSTL*SAELTTPPTRAIPSPTWP 117
TP + A PP+ A TTPPT A P+P+ P
Sbjct: 74 TPTPWTPTPATPPPTPATPATPTTPPTPA-PAPSTP 108
>12_02_0582 - 20789739-20790182,20794940-20796120,20796450-20796477
Length = 550
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 62 VARIVKLRKRWQHSCSTA 115
VAR L KRW+H C A
Sbjct: 42 VARTAVLSKRWRHLCGIA 59
>08_02_1021 + 23705474-23705764,23706706-23706729
Length = 104
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/21 (38%), Positives = 9/21 (42%)
Frame = +3
Query: 90 DGSTVVQPHWPSGTGYGSSWW 152
D V Q WP+G WW
Sbjct: 20 DAEAVKQQLWPAGARVAGEWW 40
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 221 PANLSKITAL*PPSTL*SAELTTPPTRAIPSPT 123
P N S + PPST T PTR PSP+
Sbjct: 133 PFNTSIAPSASPPSTPGGPAPTPTPTRPAPSPS 165
>06_03_0905 + 25843547-25844314
Length = 255
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 242 PETKFFTPANLSKITAL*PPSTL*SAELTTPPTRAIPSPTWP 117
P + TP + + PP T + +TTPP P T+P
Sbjct: 99 PPVTYPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYP 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,439,707
Number of Sequences: 37544
Number of extensions: 121634
Number of successful extensions: 349
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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