Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M07
         (242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...    49   4e-07
U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...    27   1.3  
U40952-12|AAA81745.1|  297|Caenorhabditis elegans Hypothetical p...    27   1.8  
AF101319-5|AAC69356.2|  530|Caenorhabditis elegans Hypothetical ...    27   1.8  
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z70718-2|CAA94676.1|  373|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical...    25   7.1  
AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z81496-1|CAB04067.1|  226|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z68215-16|CAD59144.1|  458|Caenorhabditis elegans Hypothetical p...    25   9.4  
Z68160-5|CAA92293.2|  458|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical ...    25   9.4  
AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 24/48 (50%), Positives = 28/48 (58%)
 Frame = +1

Query: 94  AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKNLV 237
           A +L  R+               +ALYNVDGG RAVIFDRF+GVKN V
Sbjct: 5   AQKLLGRLGTVGVGLSIAGGIAQTALYNVDGGQRAVIFDRFSGVKNEV 52


>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +1

Query: 166 ALYNVDGGHRAVIFDRFAGV 225
           +++ V+ GHRA++F+R  G+
Sbjct: 39  SMFTVEAGHRAIMFNRIGGL 58


>U40952-12|AAA81745.1|  297|Caenorhabditis elegans Hypothetical
           protein C03B1.1 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 8   VRAWKVIKAVFHV*NNYYVARIVKLRKRWQH 100
           VR W+++  + H+  NY +A I+  R  W H
Sbjct: 238 VRFWRMVSPI-HLPRNYQLALILAKRNGWVH 267


>AF101319-5|AAC69356.2|  530|Caenorhabditis elegans Hypothetical
           protein K08D9.6 protein.
          Length = 530

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 39  FTFKIIITLQES*NSEKDGSTVVQPHWPSGTGYGSSW 149
           F FK I++  ES ++ K G  VV+P   + T    SW
Sbjct: 341 FNFKEIVSTLESSDTVKRGKVVVKPERYNSTWIHYSW 377


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 110 LNNCAAIFFGVLRFLQRNNY 51
           +N CA +  GV+R+L +N Y
Sbjct: 116 INMCAVVGIGVMRYLTKNTY 135


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 100 VLPSFSEFYDSCNVIIILNVKYGFYYF 20
           + P F+ FY S   I I+N  Y  Y+F
Sbjct: 44  IFPVFNHFYKSIKKIQIVNAIYILYFF 70


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 188 PPSTL*SAELTTPPTRAIPSPTWPMRLNN 102
           P ST  S   TTPPT   P+P  P R+ N
Sbjct: 447 PISTGTSYSSTTPPTTPKPAPPPPSRIPN 475


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 188 PPSTL*SAELTTPPTRAIPSPTWPMRLNN 102
           P ST  S   TTPPT   P+P  P R+ N
Sbjct: 454 PISTGPSYSSTTPPTTPKPAPPPPSRIPN 482


>Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.3 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 130 VPLGQCG*TTVLPSFSEFYDSCNVIIILNVKYGFY 26
           VPLG  G T +    ++F+++  +III +  +GF+
Sbjct: 256 VPLGYIGFTAIFDYHNQFFNNLTLIIISS--HGFF 288


>Z70718-2|CAA94676.1|  373|Caenorhabditis elegans Hypothetical
           protein C04G2.2 protein.
          Length = 373

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 131 SPTWPMRLNNCAAIFFGVLRFLQRNNYFKRE 39
           S TW  R     A F G LR+   N +F++E
Sbjct: 188 SKTWSARRARGTAEFRGTLRYTSPNVHFRKE 218


>Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical
           protein F35C11.5 protein.
          Length = 445

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 86  FGVLRFLQRNNYFKREIRLLLLSKLSPR 3
           F +L F++   ++K+EIRL  L+ LS +
Sbjct: 56  FLLLNFVESFLFYKKEIRLFFLNNLSTK 83


>AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical
           protein R12E2.2 protein.
          Length = 802

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = -3

Query: 201 YCSVTTINIVECRINNSTN*SHTQSHLANAVEQL 100
           YC V+ +N++   + +  +     +HL N +E++
Sbjct: 260 YCIVSVVNVMGSTLADEYDKEEAAAHLLNVIEEV 293


>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 92  IFFGVLRFLQRNNYFKREIRL 30
           +FF  L+ L+ NN+F+ ++R+
Sbjct: 424 VFFRFLKILEFNNFFRLKLRI 444


>Z81496-1|CAB04067.1|  226|Caenorhabditis elegans Hypothetical
           protein F09C6.1 protein.
          Length = 226

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 78  NSEKDGSTVVQPHWPSGTGYGSSWW 152
           ++ KDG   +QPH  +   +   WW
Sbjct: 202 SAHKDGRACLQPHRQAWEEFWLEWW 226


>Z68215-16|CAD59144.1|  458|Caenorhabditis elegans Hypothetical
           protein D1046.5 protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 130 VPLGQCG*TTVLPSFSEFYDSCNVIIILNV 41
           +PL  C   T LPS   F   C ++++LNV
Sbjct: 245 LPLVCCQKYTKLPSKGSFLIYCMMMVVLNV 274


>Z68160-5|CAA92293.2|  458|Caenorhabditis elegans Hypothetical
           protein D1046.5 protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 130 VPLGQCG*TTVLPSFSEFYDSCNVIIILNV 41
           +PL  C   T LPS   F   C ++++LNV
Sbjct: 245 LPLVCCQKYTKLPSKGSFLIYCMMMVVLNV 274


>AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical
           protein H20J18.1b protein.
          Length = 909

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 152 PPTRAIPSPTWPMRLNNCAAIFFGV 78
           PP   IPS  WP+    C   +F V
Sbjct: 274 PPPPGIPSMPWPISTPVCHVPYFDV 298


>AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical
           protein H20J18.1a protein.
          Length = 947

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 152 PPTRAIPSPTWPMRLNNCAAIFFGV 78
           PP   IPS  WP+    C   +F V
Sbjct: 274 PPPPGIPSMPWPISTPVCHVPYFDV 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.131    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,550,964
Number of Sequences: 27780
Number of extensions: 104151
Number of successful extensions: 266
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)