Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M06
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    29   0.29 
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    28   0.50 
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   1.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   8.1  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    24   8.1  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    24   8.1  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 326  DCLNPAKCVMVWI*PFIISSLTDNVDLSLSLAPSA*GTEIQRL-QQGF 186
            D  NPAK  M ++  + IS +T+ VDL     P      +QR+ QQG+
Sbjct: 1008 DFENPAKAFMYYVDSYAISHITEGVDLMQVKMPFL-RRSLQRISQQGY 1054


>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 157 FQRQFAEIKKKPCCSL*ISVP*ALGAKLSERSTLSVKEEIMKGYIQTITHFAGLR-QSIV 333
           F RQF+ +  +    L I+VP  +GA+L+E+      E     +I TI + AG   Q I+
Sbjct: 29  FHRQFSTVPARTIDVLDITVPTLVGAELNEQLATKAAE-----FIDTIRNEAGANGQMIL 83

Query: 334 FYHRR 348
             + R
Sbjct: 84  LLYER 88


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 155 NFNANLRRLRKNLAAVFESQCLKHLALSSVKGQHYQLKKKL*KVISKPLHIS 310
           NFN NLR+L + L ++F S       LS   G+   L+K   K+    L +S
Sbjct: 552 NFNNNLRKLHEKLQSLFASYDKLQEDLSKRLGKKATLRKSPAKLYYVHLKLS 603


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 293  WI*PFIISSLTDNVDLSLSLAP-SA*GTEIQRLQQGFFLIS 174
            W   F++  L D +D  L+L+P S     + +L++ F L+S
Sbjct: 3157 WPENFVLRGLKDAIDAILNLSPFSPIAEYLSKLERVFHLLS 3197


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 283 GYIQTITHFAGLRQSIVFYHR 345
           GYI+ I H    RQ++V Y+R
Sbjct: 346 GYIRHIEHLQVFRQAMVNYYR 366


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 376 LPNNFIITSTYDDKKLLTVLILRNV 302
           LPN  II  TY    + TVL L +V
Sbjct: 292 LPNGIIIADTYQRTNVPTVLSLGDV 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,149
Number of Sequences: 5004
Number of extensions: 26929
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)