Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M06
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524     28   3.4  
07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792     27   7.8  

>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
          Length = 652

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 140 SLT*GNFNANLRRLRKNLAAVFESQCLKHLALSSV 244
           S T G+      R +   A V ++QCLKHLAL  V
Sbjct: 577 SSTSGSSAIKNSRSKYQAAIVLKNQCLKHLALGEV 611


>07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792
          Length = 622

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 229 GAKLSERSTLSVKEEIMKGYIQTITHFAGLRQSIV 333
           G K+S   ++ V   IMK  +  I  F G R  +V
Sbjct: 222 GIKISRNGSVDVSSGIMKNMLPRIRTFVGFRPQLV 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,388,900
Number of Sequences: 37544
Number of extensions: 132077
Number of successful extensions: 166
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)