Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M06
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical p...    27   5.4  
AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical...    27   7.1  
AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical ...    27   7.1  
AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoid...    27   7.1  
AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory cha...    27   7.1  

>Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical
           protein F11E6.11 protein.
          Length = 201

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 65  QHELNHYFVILICFLICELNFIY 133
           Q++ N+YF + IC L+  L+F +
Sbjct: 33  QNKHNYYFTLFICLLLTPLSFYF 55


>AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical
           protein Y26D4A.17 protein.
          Length = 108

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 68  HELNHYFVILICFLICELNFIYGESLT*G 154
           HELNH+ +I+  +LI    +I   S+T G
Sbjct: 63  HELNHFPLIICIYLIFFFEYITFRSMTSG 91


>AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical
           protein Y26D4A.5 protein.
          Length = 113

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 68  HELNHYFVILICFLICELNFIYGESLT*G 154
           HELNH+ +I+  +LI    +I   S+T G
Sbjct: 68  HELNHFPLIICIYLIFFFEYITFRSMTSG 96


>AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic
           avoidance abnormal protein9 protein.
          Length = 937

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 46  YLRVQASA*IKSLFCHSHMFLNL*VKFHLW*KFNVRKFQRQFA 174
           YLR   +A  K++FC +++FL L + F L  K  + +    FA
Sbjct: 462 YLRNLKTAPAKAVFCIANLFLLLCIPFRLMKKHEIEEALFVFA 504


>AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory
           channel protein.
          Length = 937

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 46  YLRVQASA*IKSLFCHSHMFLNL*VKFHLW*KFNVRKFQRQFA 174
           YLR   +A  K++FC +++FL L + F L  K  + +    FA
Sbjct: 462 YLRNLKTAPAKAVFCIANLFLLLCIPFRLMKKHEIEEALFVFA 504


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,155,359
Number of Sequences: 27780
Number of extensions: 143799
Number of successful extensions: 228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)