Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M05
(174 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0819 + 23432681-23432998,23433118-23433348 28 1.2
04_01_0370 + 4861754-4862222,4862227-4862372 27 1.6
01_06_0285 + 28183108-28183209,28183495-28183754,28183950-281842... 27 1.6
04_01_0379 - 5005811-5006449,5007068-5007121,5007516-5007584 27 2.8
04_01_0369 + 4840371-4841294,4841921-4842559 27 2.8
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 27 2.8
01_02_0063 - 10746968-10747783,10747995-10748222 27 2.8
02_04_0054 + 19279579-19280772 26 3.7
08_02_0796 - 21300251-21300373,21300846-21301721 25 6.5
04_01_0367 + 4834602-4835489,4836117-4836644 25 8.6
01_06_1794 - 39919363-39920025 25 8.6
>12_02_0819 + 23432681-23432998,23433118-23433348
Length = 182
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 37 F*VLAAVWMVEGNPMILPD--NDYFDLGIHDQVLGVFRIS 150
F V AA W V G +LP+ +FD G HDQ G ++
Sbjct: 76 FEVAAAAWEVAGGATLLPEAMQLWFDFG-HDQGFGYMALA 114
>04_01_0370 + 4861754-4862222,4862227-4862372
Length = 204
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 132 EDLVMNTEIKIVVIRQNHRIPFYHPNGSQHLELPDTSCWRFLVP 1
E + N IR+ RI YHP H+ + DT +L+P
Sbjct: 61 ESDIQNLTYLKACIREAFRIHPYHPFNPPHVAISDTIIAGYLIP 104
>01_06_0285 +
28183108-28183209,28183495-28183754,28183950-28184237,
28184385-28184495,28184815-28184905,28185146-28185214,
28185627-28185716,28185887-28185937,28186040-28186258,
28186371-28186490
Length = 466
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 90 RQNHRIPFYHPNGSQHLELPDTSCWRFLVP 1
R + F HP Q LE TS W F VP
Sbjct: 119 RGGDEVGFLHPTQFQSLEHSQTSNWTFEVP 148
>04_01_0379 - 5005811-5006449,5007068-5007121,5007516-5007584
Length = 253
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 93 IRQNHRIPFYHPNGSQHLELPDTSCWRFLVP 1
IR+ R+ YHP H+ + DT+ +++P
Sbjct: 101 IREAFRLHPYHPFNPPHVAIADTTVAGYMIP 131
>04_01_0369 + 4840371-4841294,4841921-4842559
Length = 520
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 93 IRQNHRIPFYHPNGSQHLELPDTSCWRFLVP 1
IR+ R+ YHP H+ + DT+ +++P
Sbjct: 368 IREAFRLHPYHPFNPPHVAIADTTVAGYMIP 398
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 129 DLVMNTEIKIVVIRQNHRIPFYHPNGS 49
DL T++ IVV HRIP YH + +
Sbjct: 827 DLSRKTDLVIVVHNLAHRIPQYHQSNT 853
>01_02_0063 - 10746968-10747783,10747995-10748222
Length = 347
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 121 HEYRDQNSRYQAESSDSLLPSKRQPTP 41
HEY D + + ++ SDSLL + P P
Sbjct: 303 HEYADNATLWDSDFSDSLLKLSQLPMP 329
>02_04_0054 + 19279579-19280772
Length = 397
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -3
Query: 172 AQFHVIS*RFGRLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPRITRYLMLEVPRA 2
A++H + F RG G D + D L+ S+ R+ R LML +PR+
Sbjct: 101 ARYHTL---FALRRGGGVSLTDAALDLRRREVDCLVESEPDLVSRLRRLLMLTLPRS 154
>08_02_0796 - 21300251-21300373,21300846-21301721
Length = 332
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 139 RLRGPGHEYRDQNSRYQAESSDS 71
R+RGPGH + D + +S DS
Sbjct: 151 RVRGPGHHHDDDAAADDDDSEDS 173
>04_01_0367 + 4834602-4835489,4836117-4836644
Length = 471
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 138 DSEDLVMNTEIKIVVIRQNHRIPFYHPNGSQHLELPDTSCWRFLVP 1
+ D+ T +K IR+ RI YHP H+ + + + F++P
Sbjct: 342 EESDIHSLTYLK-ACIREAFRIHPYHPFNPSHVAIANITIAGFMIP 386
>01_06_1794 - 39919363-39920025
Length = 220
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 124 GHEYRDQNSRYQAESSDSLLPSKRQPTP 41
G + + Q +Y+A ++ +KRQP P
Sbjct: 26 GRQQQQQQQQYEAAAAGDKTSAKRQPPP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,187,935
Number of Sequences: 37544
Number of extensions: 83624
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -