Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M05
         (174 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-56|CAB16513.1|  131|Caenorhabditis elegans Hypothetical p...    26   4.1  
U28742-3|AAA68333.3|  837|Caenorhabditis elegans Hypothetical pr...    25   7.2  
DQ407523-1|ABD85015.1|  856|Caenorhabditis elegans OGA-1c protein.     25   7.2  
DQ407522-1|ABD85014.1|  854|Caenorhabditis elegans OGA-1b protein.     25   7.2  
DQ407521-1|ABD85013.1|  870|Caenorhabditis elegans OGA-1d protein.     25   7.2  

>Z99281-56|CAB16513.1|  131|Caenorhabditis elegans Hypothetical
           protein Y57G11C.12b protein.
          Length = 131

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 100 YFDLGIHDQVLGVFR 144
           ++D G+HD  LGVFR
Sbjct: 49  WWDFGLHDMPLGVFR 63


>U28742-3|AAA68333.3|  837|Caenorhabditis elegans Hypothetical
           protein T20B5.3 protein.
          Length = 837

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 43  VLAAVWMVEGNPMILPDNDYFD 108
           +  A WM++GN +  P+N+ F+
Sbjct: 546 IAVARWMMQGNALDNPENNLFE 567


>DQ407523-1|ABD85015.1|  856|Caenorhabditis elegans OGA-1c protein.
          Length = 856

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 43  VLAAVWMVEGNPMILPDNDYFD 108
           +  A WM++GN +  P+N+ F+
Sbjct: 563 IAVARWMMQGNALDNPENNLFE 584


>DQ407522-1|ABD85014.1|  854|Caenorhabditis elegans OGA-1b protein.
          Length = 854

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 43  VLAAVWMVEGNPMILPDNDYFD 108
           +  A WM++GN +  P+N+ F+
Sbjct: 563 IAVARWMMQGNALDNPENNLFE 584


>DQ407521-1|ABD85013.1|  870|Caenorhabditis elegans OGA-1d protein.
          Length = 870

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 43  VLAAVWMVEGNPMILPDNDYFD 108
           +  A WM++GN +  P+N+ F+
Sbjct: 579 IAVARWMMQGNALDNPENNLFE 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,246,493
Number of Sequences: 27780
Number of extensions: 68772
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)