Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M04
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 226 9e-61
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 226 9e-61
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.27
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 0.81
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 1.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 1.9
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 2.5
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 4.3
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 4.3
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 5.7
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 25 5.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 5.7
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 5.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 24 10.0
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 226 bits (553), Expect = 9e-61
Identities = 100/124 (80%), Positives = 110/124 (88%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINNMLSCAGADRLQTGMRGAFG 388
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RIN MLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 389 KPQG 400
KP G
Sbjct: 121 KPNG 124
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 226 bits (553), Expect = 9e-61
Identities = 100/124 (80%), Positives = 110/124 (88%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINNMLSCAGADRLQTGMRGAFG 388
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RIN MLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 389 KPQG 400
KP G
Sbjct: 121 KPNG 124
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.27
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 53 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 229
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 230 G 232
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 0.81
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 110 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 229
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 8 GRFVENTMGRRPARCYRYCKNKPYPK 85
G F++N G + C+ C K YPK
Sbjct: 423 GEFLKNAAGMQCIDCHYTCHKKCYPK 448
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 1.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 272 KDQFHIRMRLHPFHVIRINNMLSCAGADRLQTGMR 376
+D H+RM ++ FH IN+MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 2.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 224 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 105
P P +S+ R Q+LSA + S+P S PS GSL +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 2.5
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 131 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 274
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 391 FPERTTHPSLEPISSSARQHVIDAD 317
+P+R T PSL+ + + HV+ D
Sbjct: 233 YPQRATSPSLKQVPTYLGTHVLQQD 257
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 169 WEVIHCRSLFAQVENTDLWVRHTPT 95
+ ++H +LFA EN D ++ PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 24.6 bits (51), Expect = 5.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 396 WGFPNAPRIPV 364
W FPNAP IPV
Sbjct: 48 WIFPNAPSIPV 58
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 24.6 bits (51), Expect = 5.7
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -2
Query: 396 WGFPNAPRIPVWSLSAPA---HDNMLLMRMTWKGCSLIRMWN*SLPQFFTRYL 247
WG+ N IP+W + PA + + +T +R + +L +FFTR L
Sbjct: 89 WGYVNRIEIPLW-MRVPAFGLYSKIFGCNLTEADPDDVRQYK-NLAEFFTRKL 139
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 5.7
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 86 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 196
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 5.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 135 WAKRERQWMTSH 170
W +RERQW+ H
Sbjct: 91 WLRRERQWLQRH 102
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 200 EQLSSEALEAGRICCN 247
E LSS+ + RICCN
Sbjct: 262 ESLSSQQMSCLRICCN 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,562
Number of Sequences: 5004
Number of extensions: 36646
Number of successful extensions: 123
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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