Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M03
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    56   2e-09
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    29   0.21 
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    27   0.85 
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   4.5  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    24   6.0  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    24   7.9  

>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 55.6 bits (128), Expect = 2e-09
 Identities = 27/66 (40%), Positives = 39/66 (59%)
 Frame = +3

Query: 150 EEFDSRYEAFFNRKDIDAWEILXGMNDLCGMDLVPDPKIIKSALHACRRVNDYALAVRFI 329
           EE +++Y  FF+    D +E+  G+N+    D+VP   +I+ AL A RRVND+  AVR  
Sbjct: 45  EEINTKYNDFFSNVQ-DQFELQRGLNNCFAYDIVPSSDVIEQALRAARRVNDFPTAVRIF 103

Query: 330 EACKDK 347
           E  K K
Sbjct: 104 EGIKVK 109


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 127 TAAQSSLMKNSIADMKPSSTEKTLMPG 207
           ++++SS  K++ ADMKP +  K++ PG
Sbjct: 705 SSSKSSSAKSTAADMKPKADSKSISPG 731


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 245 VHATKVVHPXKNFPGINVFSVEEGFISAIEFFIRL 141
           V A +++HP K FP I  F  E+  +  +   +RL
Sbjct: 150 VWAHQLLHPNKQFPAIRPFPNEKSLVRHVARQVRL 184


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 165 RYEAFFNRKDIDAWEI 212
           +YEAF N +D + WEI
Sbjct: 32  QYEAFKNERDHNLWEI 47


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 201 AWEILXGMNDLCGMDLVPDPKI 266
           A E+    ND+CG+ + P  K+
Sbjct: 205 AGEVAAAWNDVCGVGIAPRAKV 226


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 203 GINVFSVEEGFISAIEFFIRLDWAAVSPSYRNYSAYH 93
           G N FSV  G +    FF   + AA+S    N++  H
Sbjct: 765 GHNFFSVTLGLLGLSHFFTTGNQAAISSLDWNFAFIH 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,493,105
Number of Sequences: 5004
Number of extensions: 28251
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)