Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M03
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0569 + 26293891-26294931 29 0.78
08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571 29 1.4
06_03_0888 + 25698754-25699689 27 3.1
02_05_0406 - 28713463-28713690,28713951-28714133,28714777-28714836 27 3.1
12_01_0297 - 2244793-2244945,2245337-2245396,2245529-2245628,224... 27 4.1
11_01_0296 - 2222329-2222481,2222777-2222836,2222965-2223064,222... 27 4.1
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 27 4.1
02_05_0329 - 27986261-27987372,27988632-27988638,27988999-279891... 27 5.5
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 27 5.5
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 26 7.2
07_01_0358 - 2631214-2632992 26 9.6
06_03_0887 + 25688726-25689616,25689759-25690406 26 9.6
>04_04_0569 + 26293891-26294931
Length = 346
Score = 29.5 bits (63), Expect = 0.78
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 171 HICYRIL-HQTRLGRRVPFLQKLQRLPSLLGPKTFSGHGPMHQKPTSAFCSSCRIL 7
H C L +Q RVP L RLP P+ F+ H P P++A S C+++
Sbjct: 119 HECVNFLEYQLYTNNRVP---DLGRLPD---PRLFATHVPFTSLPSAAAASGCKVV 168
>08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571
Length = 340
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 126 HGGPVESDEEFDSRYEAFFNRKDIDAWEILXGMNDL 233
H E D+E++ +E + R+++DA+ I M++L
Sbjct: 189 HHNEDEDDDEYEEPFEQWEARRNVDAFAIAENMHEL 224
>06_03_0888 + 25698754-25699689
Length = 311
Score = 27.5 bits (58), Expect = 3.1
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 297 LACRRGEQI*LFLGQVPSPCHKGRSSXKEFPR-HQCLFC*RRLHICYRILHQTRLGRRVP 121
LA R G + L LG+VP+ R + +E R H F R L R+L T GR +
Sbjct: 64 LARRHGPVMMLRLGEVPTLVVSSRDAAREVMRAHDAAFASRPLSATVRVL--TSGGRGII 121
Query: 120 F 118
F
Sbjct: 122 F 122
>02_05_0406 - 28713463-28713690,28713951-28714133,28714777-28714836
Length = 156
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 326 KPDSESIVIDSPAGVESRFNYFWVRYQVHATKVVHPXK 213
+PDS+++ DSP G+E + V + V + P K
Sbjct: 34 EPDSQAVPADSPHGIEVGVEFKPVEHPVEPVNLDQPVK 71
>12_01_0297 -
2244793-2244945,2245337-2245396,2245529-2245628,
2245712-2245779,2245922-2246017,2246156-2246244,
2246320-2246464,2246643-2246732,2246816-2246887,
2247052-2247132,2247361-2247492,2247613-2247690,
2247930-2248085,2248227-2248324,2248418-2248499
Length = 499
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 237 GMDLVPDPKII--KSALHACRRVNDYALAVRFIEACKD 344
G+DL P+ + KSALH C A+ R +++ D
Sbjct: 256 GIDLPPEKVFLFQKSALHKCNMAGKPAVVTRVVDSMTD 293
>11_01_0296 -
2222329-2222481,2222777-2222836,2222965-2223064,
2223152-2223219,2223369-2223464,2223603-2223691,
2223762-2223906,2224100-2224189,2224271-2224342,
2224543-2224623,2224766-2224897,2225026-2225103,
2225280-2225435,2225521-2225618,2225712-2225793
Length = 499
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 237 GMDLVPDPKII--KSALHACRRVNDYALAVRFIEACKD 344
G+DL P+ + KSALH C A+ R +++ D
Sbjct: 256 GIDLPPEKVFLFQKSALHKCNMAGKPAVVTRVVDSMTD 293
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = -2
Query: 200 INVFSVEEGFISAIEFFIRLDWAAVSPSYRNYSA-----YHRCWDQRPFQDMGQCTRSRL 36
I FS + +A++ F + W +SPS + Y A + W Q+ ++ + S L
Sbjct: 867 IKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVNGLIRKNWLQQSYEILHDMVESGL 926
Query: 35 Q 33
Q
Sbjct: 927 Q 927
>02_05_0329 -
27986261-27987372,27988632-27988638,27988999-27989128,
27989157-27989216,27989318-27989970,27990056-27990526
Length = 810
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 102 RLPSLLGPKTFSGHGPMHQKPTSAFCSSCRIL 7
RL ++ P+ + H P+ P S S CR++
Sbjct: 600 RLDAMPSPRILAVHEPLSSLPASVKASGCRVV 631
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 123 PFLQKLQRLPSLLGPKTFSGHGPMHQ 46
P+L + LPS ++FS +GP HQ
Sbjct: 693 PYLPQNYYLPSAAFQQSFSSNGPFHQ 718
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 117 RRGHGGPVESDEEFDSRYEAF 179
R HG PVE +EE + ++ F
Sbjct: 13 RNPHGAPVEEEEELEDDFDEF 33
>07_01_0358 - 2631214-2632992
Length = 592
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 207 EILXGMNDLCGMDLVPDPKIIKSALHACRRVNDYALAVR 323
E+L ++ G+D PD I S L AC AL R
Sbjct: 202 EVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRR 240
>06_03_0887 + 25688726-25689616,25689759-25690406
Length = 512
Score = 25.8 bits (54), Expect = 9.6
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 297 LACRRGEQI*LFLGQVPSPCHKGRSSXKEFPR-HQCLFC*RRLHICYRILHQTRLGRRVP 121
LA R G + L LG+VP+ R + +E R H F R L R T+ GR +
Sbjct: 66 LARRHGPVMMLRLGEVPTLVVSSRDAAREVMRTHDAAFASRPLSASVRA--ATKGGRDIA 123
Query: 120 F 118
F
Sbjct: 124 F 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,320,147
Number of Sequences: 37544
Number of extensions: 203091
Number of successful extensions: 534
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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