Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M03
         (351 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR407649-1|CAG28577.1|  150|Homo sapiens COX5A protein.                95   4e-20
BC024240-1|AAH24240.1|  150|Homo sapiens cytochrome c oxidase su...    95   4e-20
M22760-1|AAA99220.1|  150|Homo sapiens cytochrome c oxidase subu...    95   6e-20
BC110818-1|AAI10819.1|  646|Homo sapiens CHD7 protein protein.         29   5.5  
BC080627-1|AAH80627.1|  628|Homo sapiens CHD7 protein protein.         29   5.5  
BC068000-1|AAH68000.1|  594|Homo sapiens CHD7 protein protein.         29   5.5  
BC053890-1|AAH53890.1|  594|Homo sapiens CHD7 protein protein.         29   5.5  
BC014681-1|AAH14681.1|  637|Homo sapiens Unknown (protein for IM...    29   5.5  
AK123158-1|BAC85544.1|  572|Homo sapiens protein ( Homo sapiens ...    29   5.5  
AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.              28   9.5  
AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.               28   9.5  

>CR407649-1|CAG28577.1|  150|Homo sapiens COX5A protein.
          Length = 150

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 41/72 (56%), Positives = 54/72 (75%)
 Frame = +3

Query: 132 GPVESDEEFDSRYEAFFNRKDIDAWEILXGMNDLCGMDLVPDPKIIKSALHACRRVNDYA 311
           G  E+DEEFD+R+  +FN+ DIDAWE+  G+N L   D+VP+PKII +AL ACRR+ND+A
Sbjct: 44  GSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFA 103

Query: 312 LAVRFIEACKDK 347
             VR +E  KDK
Sbjct: 104 STVRILEVVKDK 115


>BC024240-1|AAH24240.1|  150|Homo sapiens cytochrome c oxidase
           subunit Va protein.
          Length = 150

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 41/72 (56%), Positives = 54/72 (75%)
 Frame = +3

Query: 132 GPVESDEEFDSRYEAFFNRKDIDAWEILXGMNDLCGMDLVPDPKIIKSALHACRRVNDYA 311
           G  E+DEEFD+R+  +FN+ DIDAWE+  G+N L   D+VP+PKII +AL ACRR+ND+A
Sbjct: 44  GSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFA 103

Query: 312 LAVRFIEACKDK 347
             VR +E  KDK
Sbjct: 104 STVRILEVVKDK 115


>M22760-1|AAA99220.1|  150|Homo sapiens cytochrome c oxidase subunit
           Va protein.
          Length = 150

 Score = 95.1 bits (226), Expect = 6e-20
 Identities = 41/72 (56%), Positives = 54/72 (75%)
 Frame = +3

Query: 132 GPVESDEEFDSRYEAFFNRKDIDAWEILXGMNDLCGMDLVPDPKIIKSALHACRRVNDYA 311
           G  E+DEEFD+R+  +FN+ DIDAWE+  G+N L   D+VP+PKII +AL ACRR+ND+A
Sbjct: 44  GSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFA 103

Query: 312 LAVRFIEACKDK 347
             VR +E  KDK
Sbjct: 104 SLVRILEVVKDK 115


>BC110818-1|AAI10819.1|  646|Homo sapiens CHD7 protein protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 138 LGRRVPFLQKLQRLPSLLGPKTFSGHGPMHQKP 40
           L    P  Q + R P+ +G  + SG G MHQ+P
Sbjct: 334 LTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP 366


>BC080627-1|AAH80627.1|  628|Homo sapiens CHD7 protein protein.
          Length = 628

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 138 LGRRVPFLQKLQRLPSLLGPKTFSGHGPMHQKP 40
           L    P  Q + R P+ +G  + SG G MHQ+P
Sbjct: 358 LTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP 390


>BC068000-1|AAH68000.1|  594|Homo sapiens CHD7 protein protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 138 LGRRVPFLQKLQRLPSLLGPKTFSGHGPMHQKP 40
           L    P  Q + R P+ +G  + SG G MHQ+P
Sbjct: 328 LTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP 360


>BC053890-1|AAH53890.1|  594|Homo sapiens CHD7 protein protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 138 LGRRVPFLQKLQRLPSLLGPKTFSGHGPMHQKP 40
           L    P  Q + R P+ +G  + SG G MHQ+P
Sbjct: 328 LTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP 360


>BC014681-1|AAH14681.1|  637|Homo sapiens Unknown (protein for
           IMAGE:3866722) protein.
          Length = 637

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 138 LGRRVPFLQKLQRLPSLLGPKTFSGHGPMHQKP 40
           L    P  Q + R P+ +G  + SG G MHQ+P
Sbjct: 328 LTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP 360


>AK123158-1|BAC85544.1|  572|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41163 fis, clone BRACE2039734. ).
          Length = 572

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 138 LGRRVPFLQKLQRLPSLLGPKTFSGHGPMHQKP 40
           L    P  Q + R P+ +G  + SG G MHQ+P
Sbjct: 90  LTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP 122


>AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.
          Length = 1336

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = -1

Query: 159 RILHQTRLGRRVPF-LQKLQRLPS----LLGPKTFSGHGPMHQKP 40
           ++L Q ++ R     ++++Q  PS    LLGP+ F G GPM Q P
Sbjct: 554 QLLEQLKIERLAQKQVEQIQPPPSSGTPLLGPQPFPGQGPMSQIP 598


>AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.
          Length = 1336

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = -1

Query: 159 RILHQTRLGRRVPF-LQKLQRLPS----LLGPKTFSGHGPMHQKP 40
           ++L Q ++ R     ++++Q  PS    LLGP+ F G GPM Q P
Sbjct: 554 QLLEQLKIERLAQKQVEQIQPPPSSGTPLLGPQPFPGQGPMSQIP 598


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,085,085
Number of Sequences: 237096
Number of extensions: 1152899
Number of successful extensions: 2573
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2573
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)